HL_6S05_081

3D structure

PDB id

6S05 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AUGAAAGU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6S05_081 not in the Motif Atlas

Geometric match to HL_3RG5_006

Geometric discrepancy: 0.291

The information below is about HL_3RG5_006

Detailed Annotation

tRNA anticodon loop

Broad Annotation

tRNA anticodon loop

Motif group

HL_87268.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6S05|1|A|A|2743
6S05|1|A|U|2744
6S05|1|A|G|2745
6S05|1|A|A|2746
6S05|1|A|A|2747
6S05|1|A|A|2748
6S05|1|A|G|2749
6S05|1|A|U|2750

Current chains

Chain A

25S ribosomal RNA

Nearby chains

Chain P

60S ribosomal protein L5

Chain T

60S ribosomal protein L21-A

Chain l

60S ribosomal protein L42-A