HL_6S0K_015

3D structure

PDB id

6S0K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome nascent chain in complex with SecA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGGCGAG

Length

7 nucleotides

Bulged bases

6S0K|1|A|C|490

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6S0K_015 not in the Motif Atlas

Homologous match to HL_5J7L_148

Geometric discrepancy: 0.101

The information below is about HL_5J7L_148

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

6S0K|1|A|C|487
6S0K|1|A|G|488
6S0K|1|A|G|489
6S0K|1|A|C|490
6S0K|1|A|G|491
6S0K|1|A|A|492
6S0K|1|A|G|493

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain T

50S ribosomal protein L22

Chain k

Cytoskeleton protein RodZ