HL_6S0K_049

3D structure

PDB id

6S0K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome nascent chain in complex with SecA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

6S0K|1|A|A|2030, 6S0K|1|A|A|2031, 6S0K|1|A|G|2032

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6S0K_049 not in the Motif Atlas

Homologous match to HL_4WF9_047

Geometric discrepancy: 0.0939

The information below is about HL_4WF9_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78372.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

10

Unit IDs

6S0K|1|A|G|2027
6S0K|1|A|U|2028
6S0K|1|A|G|2029
6S0K|1|A|A|2030
6S0K|1|A|A|2031
6S0K|1|A|G|2032
6S0K|1|A|A|2033
6S0K|1|A|U|2034
6S0K|1|A|G|2035
6S0K|1|A|C|2036

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain S

50S ribosomal protein L21

Chain b

50S ribosomal protein L32