HL_6S0X_015

3D structure

PDB id

6S0X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22) in complex with erythromycin.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

CGGAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6S0X_015 not in the Motif Atlas

Homologous match to HL_4WF9_016

Geometric discrepancy: 0.5291

The information below is about HL_4WF9_016

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

6S0X|1|A|C|533
6S0X|1|A|G|534
6S0X|1|A|G|535
6S0X|1|A|A|536
6S0X|1|A|A|537
6S0X|1|A|G|538

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain Q

50S ribosomal protein L22