6S0X Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6S0X_099 | 1/A/57:70 | No text annotation | ||
| HL_6S0X_001 | 1/A/59:68 | Pseudoknot with intercalation | homologous HL_7A0S_001 HL_17803.1 | |
| HL_6S0X_002 | 1/A/81:104 | No text annotation | ||
| HL_6S0X_003 | 1/A/122:127 | No text annotation | homologous HL_4WF9_003 HL_75660.7 | |
| HL_6S0X_004 | 1/A/136:143 | GNRA wlth tandem sheared | homologous HL_4WF9_004 HL_98423.2 | |
| HL_6S0X_006 | 1/A/197:204 | No text annotation | homologous HL_4WF9_006 HL_48677.1 | |
| HL_6S0X_008 | 1/A/249:255 | No text annotation | homologous HL_5J7L_141 NA | |
| HL_6S0X_010 | 1/A/348:355 | No text annotation | geometric HL_8H9D_001 NA | |
| HL_6S0X_011 | 1/A/370:378 | No text annotation | ||
| HL_6S0X_107 | 1/A/422:444 | No text annotation | ||
| HL_6S0X_013 | 1/A/456:463 | No text annotation | homologous HL_7RQB_014 NA | |
| HL_6S0X_014 | 1/A/508:513 | GNRA | homologous HL_7RQB_015 NA | |
| HL_6S0X_015 | 1/A/533:538 | GNRA | homologous HL_4WF9_016 HL_34789.2 | |
| HL_6S0X_016 | 1/A/587:594 | No text annotation | geometric HL_5HR6_002 HL_50006.5 | |
| HL_6S0X_017 | 1/A/609:618 | T-loop with 2 stacked bulged bases | homologous HL_4WF9_018 HL_33597.2 | |
| HL_6S0X_018 | 1/A/655:661 | No text annotation | geometric HL_5U3G_001 HL_75660.7 | |
| HL_6S0X_019 | 1/A/674:679 | GNRA | homologous HL_7RQB_020 NA | |
| HL_6S0X_020 | 1/A/686:692 | GNRA | homologous HL_4WF9_021 HL_34789.2 | |
| HL_6S0X_022 | 1/A/789:798 | No text annotation | homologous HL_7A0S_022 HL_50204.1 | |
| HL_6S0X_101 | 1/A/824:830 | No text annotation | homologous HL_4WF9_024 HL_92935.1 | |
| HL_6S0X_024 | 1/A/871:876 | Mini UNCG | geometric HL_4WF9_037 HL_90436.2 | |
| HL_6S0X_108 | 1/A/999:1006 | No text annotation | ||
| HL_6S0X_027 | 1/A/1022:1029 | No text annotation | ||
| HL_6S0X_029 | 1/A/1213:1218 | No text annotation | ||
| HL_6S0X_030 | 1/A/1260:1265 | No text annotation | geometric HL_3HHN_007 HL_80709.5 | |
| HL_6S0X_031 | 1/A/1318:1326 | T-loop with 2 stacked bulged bases | homologous HL_7A0S_032 HL_33597.2 | |
| HL_6S0X_032 | 1/A/1360:1368 | No text annotation | geometric HL_7A0S_041 NA | |
| HL_6S0X_033 | 1/A/1400:1405 | GNRA | homologous HL_5J7L_167 NA | |
| HL_6S0X_034 | 1/A/1426:1435 | No text annotation | homologous HL_4WF9_035 HL_77449.1 | |
| HL_6S0X_036 | 1/A/1612:1615 | No text annotation | homologous HL_7RQB_039 NA | |
| HL_6S0X_037 | 1/A/1656:1663 | No text annotation | homologous HL_7RQB_040 NA | |
| HL_6S0X_038 | 1/A/1673:1681 | GNRA with extra cWW | homologous HL_4WF9_039 HL_87268.1 | |
| HL_6S0X_039 | 1/A/1735:1740 | UNCG | geometric HL_4V9F_044 HL_61337.2 | |
| HL_6S0X_041 | 1/A/1779:1783 | No text annotation | homologous HL_7RQB_044 NA | |
| HL_6S0X_042 | 1/A/1803:1815 | No text annotation | homologous HL_7A0S_045 HL_50951.1 | |
| HL_6S0X_043 | 1/A/1833:1838 | GNRA | homologous HL_7RQB_046 NA | |
| HL_6S0X_046 | 1/A/1976:1984 | No text annotation | homologous HL_5J7L_182 NA | |
| HL_6S0X_047 | 1/A/2054:2063 | No text annotation | ||
| HL_6S0X_049 | 1/A/2236:2242 | No text annotation | homologous HL_5J7L_185 NA | |
| HL_6S0X_050 | 1/A/2291:2303 | No text annotation | homologous HL_4WF9_050 HL_02042.1 | |
| HL_6S0X_052 | 1/A/2351:2358 | Pseudoknot geometry | homologous HL_4WF9_052 HL_52651.2 | |
| HL_6S0X_053 | 1/A/2382:2389 | GNRA with extra cWW | homologous HL_4WF9_053 HL_87268.1 | |
| HL_6S0X_054 | 1/A/2401:2406 | GNRA | homologous HL_7A0S_057 HL_34789.2 | |
| HL_6S0X_055 | 1/A/2431:2440 | No text annotation | homologous HL_7A0S_058 HL_51853.2 | |
| HL_6S0X_056 | 1/A/2498:2506 | No text annotation | homologous HL_7RQB_060 NA | |
| HL_6S0X_057 | 1/A/2555:2562 | GNRA variation | homologous HL_5J7L_194 NA | |
| HL_6S0X_109 | 1/A/2578:2584 | No text annotation | ||
| HL_6S0X_059 | 1/A/2621:2626 | GNRA | homologous HL_5J7L_196 NA | |
| HL_6S0X_061 | 1/A/2728:2733 | Ribsomal LSU H95 | homologous HL_4WF9_061 HL_12125.2 | |
| HL_6S0X_062 | 1/A/2772:2786 | No text annotation | homologous HL_5J7L_199 NA | |
| HL_6S0X_063 | 1/A/2839:2847 | No text annotation | homologous HL_4WF9_064 HL_37889.1 | |
| HL_6S0X_064 | 1/A/2876:2881 | GNRA | homologous HL_5J7L_202 NA | |
| HL_6S0X_103 | 1/B/32:46 | No text annotation | homologous HL_9DFE_067 HL_97756.3 | |
| HL_6S0X_065 | 1/B/36:42 | No text annotation | geometric HL_5J7L_203 NA | |
| HL_6S0X_066 | 1/B/83:88 | Mini UNCG | homologous HL_5J7L_204 NA | |
| HL_6S0X_074 | 1/a/328:341 | No text annotation | homologous HL_5J7L_008 NA | |
| HL_6S0X_075 | 1/a/350:355 | UNCG | homologous HL_6CZR_080 NA | |
| HL_6S0X_080 | 1/a/625:631 | GNRA-like with tWH | homologous HL_5J7L_014 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6S0X_005 | No text annotation | ||
| HL_6S0X_007 | No text annotation | ||
| HL_6S0X_106 | No text annotation | ||
| HL_6S0X_009 | No text annotation | ||
| HL_6S0X_012 | No text annotation | ||
| HL_6S0X_021 | No text annotation | ||
| HL_6S0X_100 | No text annotation | ||
| HL_6S0X_023 | No text annotation | ||
| HL_6S0X_025 | No text annotation | ||
| HL_6S0X_026 | tRNA D-loop | ||
| HL_6S0X_028 | No text annotation | ||
| HL_6S0X_035 | Pseudoknot geometry with 3' bulge | ||
| HL_6S0X_040 | No text annotation | ||
| HL_6S0X_044 | No text annotation | ||
| HL_6S0X_045 | No text annotation | ||
| HL_6S0X_102 | No text annotation | ||
| HL_6S0X_048 | No text annotation | ||
| HL_6S0X_051 | No text annotation | ||
| HL_6S0X_058 | No text annotation | ||
| HL_6S0X_060 | GNRA | ||
| HL_6S0X_067 | No text annotation | ||
| HL_6S0X_068 | No text annotation | ||
| HL_6S0X_104 | No text annotation | ||
| HL_6S0X_069 | GNRA | ||
| HL_6S0X_070 | No text annotation | ||
| HL_6S0X_071 | No text annotation | ||
| HL_6S0X_072 | GNRA related | ||
| HL_6S0X_073 | GNRA | ||
| HL_6S0X_076 | GNRA with extra near cWW | ||
| HL_6S0X_105 | No text annotation | ||
| HL_6S0X_077 | No text annotation | ||
| HL_6S0X_078 | No text annotation | ||
| HL_6S0X_110 | No text annotation | ||
| HL_6S0X_079 | Mini UNCG | ||
| HL_6S0X_081 | No text annotation | ||
| HL_6S0X_082 | GNRA | ||
| HL_6S0X_083 | No text annotation | ||
| HL_6S0X_084 | No text annotation | ||
| HL_6S0X_111 | No text annotation | ||
| HL_6S0X_085 | GNRA | ||
| HL_6S0X_086 | GNRA | ||
| HL_6S0X_087 | No text annotation | ||
| HL_6S0X_088 | No text annotation | ||
| HL_6S0X_089 | No text annotation | ||
| HL_6S0X_090 | GNRA | ||
| HL_6S0X_091 | T-loop related | ||
| HL_6S0X_092 | Externally structured | ||
| HL_6S0X_093 | No text annotation | ||
| HL_6S0X_094 | GNRA | ||
| HL_6S0X_095 | T-loop with 3 stacked bulged bases | ||
| HL_6S0X_096 | No text annotation | ||
| HL_6S0X_097 | Pseudoknot geometry | ||
| HL_6S0X_098 | GNRA |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6S0X_001 | 1/A/24:30, 1/A/555:561 | Triple sheared with non-canonical cWW | homologous IL_5J7L_245 NA | |
| IL_6S0X_002 | 1/A/36:37, 1/A/488:490 | No text annotation | ||
| IL_6S0X_003 | 1/A/152:153, 1/A/175:177 | Multiple bulged bases | geometric IL_1R3E_001 IL_05670.1 | |
| IL_6S0X_004 | 1/A/186:187, 1/A/215:217 | Single stack bend | homologous IL_4WF9_007 IL_15011.2 | |
| IL_6S0X_005 | 1/A/190:197, 1/A/204:212 | 9x8 Sarcin-Ricin; G-bulge | homologous IL_4WF9_008 IL_93502.1 | |
| IL_6S0X_006 | 1/A/241:248, 1/A/256:262 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7A0S_007 IL_62167.2 | |
| IL_6S0X_007 | 1/A/302:303, 1/A/413:415 | Single stack bend | geometric IL_5J7L_269 NA | |
| IL_6S0X_008 | 1/A/303:307, 1/A/408:413 | No text annotation | ||
| IL_6S0X_155 | 1/A/308:338, 1/A/386:407 | No text annotation | ||
| IL_6S0X_009 | 1/A/580:584, 1/A/597:601 | No text annotation | ||
| IL_6S0X_183 | 1/A/631:633, 1/A/712:713 | No text annotation | geometric IL_1HYS_003 NA | |
| IL_6S0X_156 | 1/A/638:640, 1/A/705:707 | No text annotation | ||
| IL_6S0X_013 | 1/A/647:653, 1/A/663:669 | No text annotation | ||
| IL_6S0X_014 | 1/A/717:719, 1/A/851:853 | No text annotation | geometric IL_7RQB_017 NA | |
| IL_6S0X_015 | 1/A/719:723, 1/A/844:851 | tHW-tHW cross-strand stack | homologous IL_7A0S_015 IL_73855.1 | |
| IL_6S0X_016 | 1/A/742:743, 1/A/808:810 | Single bulged A | geometric IL_4WF9_022 IL_14190.2 | |
| IL_6S0X_017 | 1/A/747:748, 1/A/773:775 | Single bulged G | geometric IL_4V9F_026 IL_28408.2 | |
| IL_6S0X_018 | 1/A/748:752, 1/A/769:773 | Triple sheared | homologous IL_4WF9_024 IL_15190.2 | |
| IL_6S0X_019 | 1/A/783:785, 1/A/802:803 | Major groove platform | homologous IL_4WF9_026 IL_48076.8 | |
| IL_6S0X_020 | 1/A/820:822, 1/A/832:836 | Multiple bulged bases | homologous IL_5J7L_265 NA | |
| IL_6S0X_021 | 1/A/881:883, 1/A/984:987 | No text annotation | ||
| IL_6S0X_184 | 1/A/889:893, 1/A/975:978 | No text annotation | homologous IL_4WF9_029 IL_01742.1 | |
| IL_6S0X_157 | 1/A/897:914, 1/A/953:971 | No text annotation | ||
| IL_6S0X_023 | 1/A/907:914, 1/A/953:960 | No text annotation | ||
| IL_6S0X_024 | 1/A/920:924, 1/A/943:947 | Double sheared with non-canonical cWW | homologous IL_5J7L_274 NA | |
| IL_6S0X_185 | 1/A/1038:1040, 1/A/1203:1204 | No text annotation | ||
| IL_6S0X_026 | 1/A/1042:1046, 1/A/1197:1201 | UAA/GAN | homologous IL_7RQB_036 NA | |
| IL_6S0X_027 | 1/A/1048:1057, 1/A/1193:1195 | No text annotation | ||
| IL_6S0X_160 | 1/A/1062:1068, 1/A/1184:1188 | Kink-turn related | homologous IL_4WF9_039 IL_57188.6 | |
| IL_6S0X_029 | 1/A/1068:1075, 1/A/1167:1184 | No text annotation | ||
| IL_6S0X_030 | 1/A/1075:1078, 1/A/1165:1167 | No text annotation | ||
| IL_6S0X_161 | 1/A/1075:1083, 1/A/1160:1167 | No text annotation | ||
| IL_6S0X_031 | 1/A/1079:1083, 1/A/1160:1164 | No text annotation | ||
| IL_6S0X_032 | 1/A/1212:1213, 1/A/1218:1220 | No text annotation | ||
| IL_6S0X_033 | 1/A/1243:1245, 1/A/1277:1279 | Isolated cWH basepair | homologous IL_4WF9_045 IL_10892.2 | |
| IL_6S0X_034 | 1/A/1246:1254, 1/A/1271:1276 | No text annotation | ||
| IL_6S0X_035 | 1/A/1257:1260, 1/A/1265:1268 | No text annotation | ||
| IL_6S0X_036 | 1/A/1300:1307, 1/A/2038:2044 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_4WF9_048 IL_62167.2 | |
| IL_6S0X_037 | 1/A/1356:1360, 1/A/1368:1370 | C-loop | homologous IL_5J7L_291 NA | |
| IL_6S0X_038 | 1/A/1388:1392, 1/A/1413:1417 | UAA/GAN | homologous IL_5J7L_292 NA | |
| IL_6S0X_039 | 1/A/1394:1398, 1/A/1407:1411 | tSH-tHW-tHS | homologous IL_5J7L_293 NA | |
| IL_6S0X_041 | 1/A/1451:1465, 1/A/1624:1634 | No text annotation | ||
| IL_6S0X_163 | 1/A/1477:1479, 1/A/1604:1607 | No text annotation | homologous IL_7A0S_052 IL_38565.2 | |
| IL_6S0X_164 | 1/A/1481:1510, 1/A/1571:1602 | No text annotation | ||
| IL_6S0X_165 | 1/A/1511:1515, 1/A/1565:1570 | No text annotation | homologous IL_4WF9_116 IL_25186.4 | |
| IL_6S0X_166 | 1/A/1518:1522, 1/A/1558:1562 | Double sheared with near cWW | homologous IL_7A0S_056 IL_87767.2 | |
| IL_6S0X_047 | 1/A/1695:1701, 1/A/2029:2033 | No text annotation | ||
| IL_6S0X_048 | 1/A/1701:1706, 1/A/2024:2029 | No text annotation | geometric IL_6O5F_001 NA | |
| IL_6S0X_049 | 1/A/1706:1709, 1/A/2022:2024 | No text annotation | ||
| IL_6S0X_050 | 1/A/1710:1713, 1/A/2020:2021 | Major groove platform; stack outside cWW | geometric IL_5J7L_306 NA | |
| IL_6S0X_168 | 1/A/1710:1718, 1/A/2017:2021 | No text annotation | homologous IL_4WF9_117 IL_80252.1 | |
| IL_6S0X_051 | 1/A/1713:1718, 1/A/2017:2020 | Intercalated tWH | homologous IL_4WF9_065 IL_28217.1 | |
| IL_6S0X_052 | 1/A/1730:1735, 1/A/1740:1746 | tSH-tSH-tHH-tHS | homologous IL_7A0S_063 IL_20700.1 | |
| IL_6S0X_053 | 1/A/1755:1759, 1/A/1770:1774 | No text annotation | ||
| IL_6S0X_054 | 1/A/1797:1798, 1/A/2007:2009 | Single bulged A | homologous IL_5J7L_312 NA | |
| IL_6S0X_055 | 1/A/1825:1831, 1/A/1840:1848 | Kink-turn related | homologous IL_7RQB_070 NA | |
| IL_6S0X_056 | 1/A/1864:1867, 1/A/1929:1930 | Minor groove platform, major groove intercalation | homologous IL_5J7L_314 NA | |
| IL_6S0X_057 | 1/A/1868:1869, 1/A/1925:1928 | Major groove intercalation | homologous IL_5J7L_315 NA | |
| IL_6S0X_058 | 1/A/1873:1876, 1/A/1919:1921 | No text annotation | geometric IL_4V9F_072 IL_75527.2 | |
| IL_6S0X_169 | 1/A/1873:1882, 1/A/1914:1921 | No text annotation | ||
| IL_6S0X_059 | 1/A/1876:1882, 1/A/1914:1919 | No text annotation | ||
| IL_6S0X_060 | 1/A/1883:1887, 1/A/1909:1913 | Triple sheared | homologous IL_7RQB_075 NA | |
| IL_6S0X_061 | 1/A/1961:1972, 1/A/1988:1991 | No text annotation | homologous IL_4WF9_077 IL_84014.1 | |
| IL_6S0X_062 | 1/A/2077:2079, 1/A/2644:2645 | Major groove platform | homologous IL_7A0S_073 IL_48076.8 | |
| IL_6S0X_063 | 1/A/2080:2083, 1/A/2638:2643 | No text annotation | ||
| IL_6S0X_064 | 1/A/2094:2096, 1/A/2469:2470 | Single bulged U | homologous IL_7A0S_075 IL_97561.2 | |
| IL_6S0X_065 | 1/A/2097:2098, 1/A/2465:2468 | Minor groove platform | homologous IL_7RQB_081 NA | |
| IL_6S0X_066 | 1/A/2108:2110, 1/A/2263:2266 | Isolated tHS basepair with bulges | homologous IL_4WF9_082 IL_87316.1 | |
| IL_6S0X_071 | 1/A/2229:2231, 1/A/2247:2248 | Single bulged G | geometric IL_3NDB_004 NA | |
| IL_6S0X_188 | 1/A/2377:2380, 1/A/2391:2394 | Double sheared | homologous IL_4WF9_087 IL_58355.2 | |
| IL_6S0X_171 | 1/A/2428:2430, 1/A/2441:2442 | No text annotation | ||
| IL_6S0X_075 | 1/A/2484:2486, 1/A/2520:2521 | Major groove platform | homologous IL_5J7L_393 NA | |
| IL_6S0X_172 | 1/A/2486:2488, 1/A/2516:2520 | No text annotation | ||
| IL_6S0X_077 | 1/A/2493:2497, 1/A/2507:2511 | Double sheared with non-canonical cWW | homologous IL_7A0S_087 IL_87767.2 | |
| IL_6S0X_078 | 1/A/2534:2535, 1/A/2607:2609 | Major groove platform | homologous IL_7A0S_088 IL_46637.2 | |
| IL_6S0X_079 | 1/A/2537:2539, 1/A/2601:2605 | Isolated non-canonical cWW with bulges | geometric IL_4WF9_095 IL_68118.2 | |
| IL_6S0X_080 | 1/A/2539:2540, 1/A/2598:2601 | Multiple bulged bases | homologous IL_7RQB_098 NA | |
| IL_6S0X_081 | 1/A/2549:2550, 1/A/2567:2570 | No text annotation | ||
| IL_6S0X_082 | 1/A/2618:2619, 1/A/2628:2630 | No text annotation | homologous IL_8VTW_100 NA | |
| IL_6S0X_083 | 1/A/2663:2667, 1/A/2801:2809 | tSH-tHS-tHW | homologous IL_7RQB_102 NA | |
| IL_6S0X_085 | 1/A/2707:2711, 1/A/2752:2754 | C-loop | homologous IL_4WF9_101 IL_63596.12 | |
| IL_6S0X_086 | 1/A/2714:2718, 1/A/2745:2749 | UAA/GAN related, with intercalation | homologous IL_4WF9_102 IL_82016.1 | |
| IL_6S0X_087 | 1/A/2722:2723, 1/A/2738:2741 | Multiple bulged bases | homologous IL_5J7L_349 NA | |
| IL_6S0X_088 | 1/A/2764:2769, 1/A/2789:2794 | UAA/GAN with extra cWW | homologous IL_7A0S_098 IL_91079.1 | |
| IL_6S0X_089 | 1/A/2816:2831, 1/A/2909:2913 | No text annotation | ||
| IL_6S0X_189 | 1/A/2858:2859, 1/A/2898:2900 | Major groove intercalation | homologous IL_7A0S_099 IL_28408.2 | |
| IL_6S0X_190 | 1/A/2862:2865, 1/A/2891:2895 | No text annotation | ||
| IL_6S0X_174 | 1/A/2867:2872, 1/A/2885:2889 | No text annotation | ||
| IL_6S0X_093 | 1/B/15:16, 1/B/63:65 | Major groove intercalation | homologous IL_4WF9_112 IL_14190.2 | |
| IL_6S0X_094 | 1/B/21:29, 1/B/49:58 | No text annotation | ||
| IL_6S0X_095 | 1/B/32:36, 1/B/42:46 | Symmetric double minor groove platform | homologous IL_7RQB_114 NA | |
| IL_6S0X_096 | 1/B/69:77, 1/B/94:102 | Bacterial 5S Loop E | homologous IL_7A0S_106 IL_71138.1 | |
| IL_6S0X_097 | 1/B/78:80, 1/B/91:93 | Isolated non-canonical cWW pair | homologous IL_7A0S_107 IL_71625.2 | |
| IL_6S0X_100 | 1/a/48:53, 1/a/367:369 | No text annotation | geometric IL_5J7L_003 NA | |
| IL_6S0X_101 | 1/a/54:57, 1/a/364:366 | No text annotation | ||
| IL_6S0X_103 | 1/a/68:71, 1/a/98:101 | Tandem non-canonical cWW pairs | geometric IL_4K27_001 IL_15225.2 | |
| IL_6S0X_128 | 1/a/896:903, 1/a/914:919 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_5J7L_038 NA | |
| IL_6S0X_149 | 1/a/1422:1424, 1/a/1497:1499 | Isolated non-canonical cWW pair | homologous IL_5J7L_061 NA | |
| IL_6S0X_150 | 1/a/1426:1429, 1/a/1492:1495 | Double sheared | homologous IL_5J7L_062 NA | |
| IL_6S0X_151 | 1/a/1434:1437, 1/a/1484:1487 | Tandem non-canonical cWW pairs | geometric IL_5LQO_002 IL_15225.2 | |
| IL_6S0X_152 | 1/a/1440:1445, 1/a/1477:1481 | Triple sheared related | geometric IL_4V9F_018 IL_67427.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6S0X_010 | No text annotation | ||
| IL_6S0X_011 | No text annotation | ||
| IL_6S0X_012 | No text annotation | ||
| IL_6S0X_022 | No text annotation | ||
| IL_6S0X_158 | No text annotation | ||
| IL_6S0X_025 | No text annotation | ||
| IL_6S0X_159 | No text annotation | ||
| IL_6S0X_028 | No text annotation | ||
| IL_6S0X_186 | No text annotation | ||
| IL_6S0X_162 | No text annotation | ||
| IL_6S0X_040 | No text annotation | ||
| IL_6S0X_187 | No text annotation | ||
| IL_6S0X_042 | No text annotation | ||
| IL_6S0X_043 | No text annotation | ||
| IL_6S0X_044 | Double sheared; A in syn; two near cWW pairs | ||
| IL_6S0X_167 | No text annotation | ||
| IL_6S0X_045 | No text annotation | ||
| IL_6S0X_046 | No text annotation | ||
| IL_6S0X_067 | Isolated non-canonical cWW pair | ||
| IL_6S0X_170 | No text annotation | ||
| IL_6S0X_068 | No text annotation | ||
| IL_6S0X_069 | No text annotation | ||
| IL_6S0X_070 | No text annotation | ||
| IL_6S0X_072 | No text annotation | ||
| IL_6S0X_073 | No text annotation | ||
| IL_6S0X_074 | Isolated non-canonical cWW pair | ||
| IL_6S0X_076 | No text annotation | ||
| IL_6S0X_173 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_6S0X_084 | Sarcin-Ricin target in LSU H95; G-bulge | ||
| IL_6S0X_090 | Isolated non-canonical cWW with bulges | ||
| IL_6S0X_091 | No text annotation | ||
| IL_6S0X_092 | No text annotation | ||
| IL_6S0X_098 | Single bulged G | ||
| IL_6S0X_099 | Single bulged A | ||
| IL_6S0X_102 | Multiple bulged bases | ||
| IL_6S0X_104 | Multiple bulged bases | ||
| IL_6S0X_105 | Minor groove platform related | ||
| IL_6S0X_175 | No text annotation | ||
| IL_6S0X_106 | tWH-tWH-tHW-tHW | ||
| IL_6S0X_107 | Kink-turn with non-sequential stacking | ||
| IL_6S0X_108 | No text annotation | ||
| IL_6S0X_109 | Major groove minor groove platform; mini C-loop | ||
| IL_6S0X_110 | Single bulged U | ||
| IL_6S0X_111 | C-loop | ||
| IL_6S0X_112 | Single bulged G | ||
| IL_6S0X_113 | 6x5 Sarcin-Ricin; G-bulge | ||
| IL_6S0X_176 | No text annotation | ||
| IL_6S0X_114 | SSU/LSU pseudoknot | ||
| IL_6S0X_115 | Kink-turn related | ||
| IL_6S0X_116 | No text annotation | ||
| IL_6S0X_117 | tSH-tHW-tHS | ||
| IL_6S0X_118 | Major groove platform | ||
| IL_6S0X_119 | No text annotation | ||
| IL_6S0X_120 | No text annotation | ||
| IL_6S0X_121 | Major groove platform; stack outside cWW | ||
| IL_6S0X_122 | Major groove platform | ||
| IL_6S0X_191 | Tandem non-canonical cWW pairs | ||
| IL_6S0X_123 | No text annotation | ||
| IL_6S0X_177 | Triple non-canonical cWW pairs | ||
| IL_6S0X_124 | No text annotation | ||
| IL_6S0X_125 | No text annotation | ||
| IL_6S0X_126 | No text annotation | ||
| IL_6S0X_192 | No text annotation | ||
| IL_6S0X_127 | tSH-tHW-tHS | ||
| IL_6S0X_129 | Isolated non-canonical cWW pair | ||
| IL_6S0X_130 | Single bulged G | ||
| IL_6S0X_178 | tSH-tHW-tHS-cWW | ||
| IL_6S0X_193 | No text annotation | ||
| IL_6S0X_131 | No text annotation | ||
| IL_6S0X_132 | No text annotation | ||
| IL_6S0X_179 | No text annotation | ||
| IL_6S0X_133 | Single stack bend | ||
| IL_6S0X_134 | Major groove platform | ||
| IL_6S0X_135 | No text annotation | ||
| IL_6S0X_180 | No text annotation | ||
| IL_6S0X_136 | No text annotation | ||
| IL_6S0X_137 | Minor groove platform | ||
| IL_6S0X_138 | Single bulged A | ||
| IL_6S0X_139 | Isolated non-canonical cWW pair | ||
| IL_6S0X_140 | No text annotation | ||
| IL_6S0X_141 | No text annotation | ||
| IL_6S0X_181 | No text annotation | ||
| IL_6S0X_142 | No text annotation | ||
| IL_6S0X_194 | No text annotation | ||
| IL_6S0X_182 | No text annotation | ||
| IL_6S0X_143 | No text annotation | ||
| IL_6S0X_144 | No text annotation | ||
| IL_6S0X_145 | No text annotation | ||
| IL_6S0X_146 | No text annotation | ||
| IL_6S0X_147 | Isolated non-canonical cWW pair | ||
| IL_6S0X_148 | Isolated non-canonical cWW pair | ||
| IL_6S0X_153 | Isolated non-canonical cWW pair | ||
| IL_6S0X_154 | No text annotation | ||
| IL_6S0X_195 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6S0X_024 | 1/A/30:31, 1/A/520:530, 1/A/541:555 | No text annotation | homologous J3_9DFE_002 J3_17917.1 | |
| J3_6S0X_001 | 1/A/32:35, 1/A/491:507, 1/A/514:519 | No text annotation | homologous J3_9DFE_003 J3_07616.1 | |
| J3_6S0X_002 | 1/A/56:57, 1/A/70:76, 1/A/109:113 | No text annotation | homologous J3_5J7L_037 NA | |
| J3_6S0X_025 | 1/A/340:344, 1/A/359:368, 1/A/380:384 | No text annotation | ||
| J3_6S0X_004 | 1/A/728:734, 1/A/818:820, 1/A/836:839 | No text annotation | homologous J3_5J7L_038 NA | |
| J3_6S0X_005 | 1/A/743:745, 1/A/777:781, 1/A/805:808 | No text annotation | homologous J3_4WF9_003 J3_69816.1 | |
| J3_6S0X_006 | 1/A/1335:1340, 1/A/1669:1671, 1/A/1683:1686 | No text annotation | homologous J3_7RQB_007 NA | |
| J3_6S0X_007 | 1/A/1342:1346, 1/A/1649:1655, 1/A/1664:1667 | No text annotation | homologous J3_4WF9_005 J3_68164.1 | |
| J3_6S0X_026 | 1/A/1381:1387, 1/A/1418:1422, 1/A/1439:1440 | No text annotation | homologous J3_7A0S_018 J3_94309.1 | |
| J3_6S0X_027 | 1/A/1468:1473, 1/A/1611:1612, 1/A/1615:1621 | No text annotation | homologous J3_5J7L_069 NA | |
| J3_6S0X_008 | 1/A/2118:2120, 1/A/2223:2229, 1/A/2248:2255 | No text annotation | ||
| J3_6S0X_009 | 1/A/2309:2312, 1/A/2410:2422, 1/A/2448:2454 | No text annotation | ||
| J3_6S0X_010 | 1/A/2322:2324, 1/A/2348:2350, 1/A/2359:2364 | No text annotation | homologous J3_4WF9_008 J3_05327.1 | |
| J3_6S0X_011 | 1/A/2544:2547, 1/A/2572:2574, 1/A/2588:2594 | No text annotation | homologous J3_4WF9_009 J3_32601.6 | |
| J3_6S0X_012 | 1/A/2834:2835, 1/A/2851:2857, 1/A/2901:2906 | No text annotation | ||
| J3_6S0X_013 | 1/B/9:14, 1/B/66:68, 1/B/103:106 | No text annotation | ||
| J3_6S0X_014 | 1/a/47:48, 1/a/369:375, 1/a/401:403 | No text annotation | homologous J3_5J7L_001 NA | |
| J3_6S0X_028 | 1/a/47:53, 1/a/367:375, 1/a/401:403 | No text annotation | homologous J3_4LFB_014 J3_63856.1 | |
| J4_6S0X_001 | 1/A/644:647, 1/A/669:673, 1/A/680:683, 1/A/695:701 | No text annotation | homologous J4_5J7L_020 NA | |
| J4_6S0X_012 | 1/A/1308:1313, 1/A/1331:1332, 1/A/1689:1693, 1/A/2035:2037 | No text annotation | ||
| J4_6S0X_003 | 1/A/1347:1351, 1/A/1375:1380, 1/A/1441:1442, 1/A/1641:1648 | No text annotation | homologous J4_4WF9_005 J4_77353.1 | |
| J4_6S0X_004 | 1/A/1799:1803, 1/A/1815:1819, 1/A/1854:1857, 1/A/2002:2006 | No text annotation | homologous J4_5J7L_025 NA | |
| J4_6S0X_005 | 1/A/1860:1863, 1/A/1931:1936, 1/A/1948:1961, 1/A/1991:1999 | No text annotation | ||
| J4_6S0X_006 | 1/A/2101:2104, 1/A/2270:2286, 1/A/2308:2309, 1/A/2454:2462 | No text annotation | ||
| J4_6S0X_007 | 1/A/2312:2320, 1/A/2366:2374, 1/A/2397:2399, 1/A/2408:2410 | No text annotation | ||
| J4_6S0X_008 | 1/A/2670:2676, 1/A/2698:2704, 1/A/2757:2762, 1/A/2796:2798 | No text annotation | ||
| J4_6S0X_009 | 1/a/114:122, 1/a/246:248, 1/a/294:297, 1/a/319:320 | No text annotation | ||
| J5_6S0X_001 | 1/A/47:54, 1/A/115:120, 1/A/129:130, 1/A/149:151, 1/A/178:180 | No text annotation | ||
| J5_6S0X_009 | 1/A/271:276, 1/A/295:306, 1/A/409:421, 1/A/445:452, 1/A/467:470 | No text annotation | ||
| J5_6S0X_003 | 1/A/627:631, 1/A/713:716, 1/A/854:857, 1/A/1234:1239, 1/A/1283:1294 | No text annotation | ||
| J5_6S0X_004 | 1/A/1718:1726, 1/A/1750:1751, 1/A/1778:1779, 1/A/1783:1791, 1/A/2015:2017 | No text annotation | homologous J5_4WF9_005 J5_99177.1 | |
| J5_6S0X_005 | 1/A/2080:2091, 1/A/2473:2482, 1/A/2523:2533, 1/A/2610:2615, 1/A/2633:2643 | No text annotation | ||
| J5_6S0X_006 | 1/A/2101:2104, 1/A/2270:2286, 1/A/2308:2312, 1/A/2410:2422, 1/A/2448:2462 | No text annotation | ||
| J5_6S0X_011 | 1/a/58:62, 1/a/105:112, 1/a/322:324, 1/a/345:347, 1/a/358:363 | No text annotation | ||
| J6_6S0X_001 | 1/A/42:47, 1/A/180:186, 1/A/217:227, 1/A/234:238, 1/A/265:269, 1/A/472:483 | No text annotation | ||
| J6_6S0X_002 | 1/A/42:47, 1/A/180:187, 1/A/215:227, 1/A/234:238, 1/A/265:269, 1/A/472:483 | No text annotation | ||
| J7_6S0X_001 | 1/A/862:867, 1/A/880:881, 1/A/987:992, 1/A/1013:1021, 1/A/1030:1036, 1/A/1206:1209, 1/A/1223:1229 | No text annotation | ||
| J10_6S0X_001 | 1/A/7:15, 1/A/570:578, 1/A/603:609, 1/A/618:622, 1/A/1299:1300, 1/A/2044:2050, 1/A/2067:2070, 1/A/2652:2657, 1/A/2815:2816, 1/A/2913:2915 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_6S0X_003 | No text annotation | ||
| J3_6S0X_015 | No text annotation | ||
| J3_6S0X_029 | No text annotation | ||
| J3_6S0X_016 | No text annotation | ||
| J3_6S0X_017 | No text annotation | ||
| J3_6S0X_030 | No text annotation | ||
| J3_6S0X_018 | No text annotation | ||
| J3_6S0X_019 | No text annotation | ||
| J3_6S0X_020 | No text annotation | ||
| J3_6S0X_031 | No text annotation | ||
| J3_6S0X_032 | No text annotation | ||
| J3_6S0X_035 | No text annotation | ||
| J3_6S0X_021 | No text annotation | ||
| J3_6S0X_033 | No text annotation | ||
| J3_6S0X_022 | No text annotation | ||
| J3_6S0X_034 | No text annotation | ||
| J3_6S0X_036 | No text annotation | ||
| J3_6S0X_023 | No text annotation | ||
| J4_6S0X_002 | No text annotation | ||
| J4_6S0X_010 | No text annotation | ||
| J4_6S0X_011 | No text annotation | ||
| J5_6S0X_002 | No text annotation | ||
| J5_6S0X_010 | No text annotation | ||
| J5_6S0X_007 | No text annotation | ||
| J5_6S0X_008 | No text annotation |
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