HL_6S0X_016

3D structure

PDB id

6S0X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22) in complex with erythromycin.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

CGUUAAUG

Length

8 nucleotides

Bulged bases

6S0X|1|A|U|590, 6S0X|1|A|U|593

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6S0X_016 not in the Motif Atlas

Geometric match to HL_5HR6_002

Geometric discrepancy: 0.3941

The information below is about HL_5HR6_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50006.3

Basepair signature

cWW-F-F

Number of instances in this motif group

6

Unit IDs

6S0X|1|A|C|587
6S0X|1|A|G|588
6S0X|1|A|U|589
6S0X|1|A|U|590
6S0X|1|A|A|591
6S0X|1|A|A|592
6S0X|1|A|U|593
6S0X|1|A|G|594

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain H

50S ribosomal protein L13

Chain P

50S ribosomal protein L21