HL_6S0X_051

3D structure

PDB id

6S0X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22) in complex with erythromycin.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

GGUUGAAAUC*C

Length

11 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6S0X_051 not in the Motif Atlas

Geometric match to HL_7A0S_011

Geometric discrepancy: 0.1534

The information below is about HL_7A0S_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

6S0X|1|A|G|2330
6S0X|1|A|G|2331
6S0X|1|A|U|2332
6S0X|1|A|U|2333
6S0X|1|A|G|2334
6S0X|1|A|A|2336
6S0X|1|A|A|2337
6S0X|1|A|A|2338
6S0X|1|A|U|2339
6S0X|1|A|C|2340
*
6S0X|1|A|C|2340

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain F

50S ribosomal protein L5