HL_6S0X_098

3D structure

PDB id

6S0X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22) in complex with erythromycin.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

CGGAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6S0X_098 not in the Motif Atlas

Geometric match to HL_5TPY_006

Geometric discrepancy: 0.1521

The information below is about HL_5TPY_006

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

6S0X|1|a|C|1526
6S0X|1|a|G|1527
6S0X|1|a|G|1528
6S0X|1|a|A|1529
6S0X|1|a|A|1530
6S0X|1|a|G|1531

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA