HL_6S0Z_026

3D structure

PDB id

6S0Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22) in complex with erythromycin.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GGGCCGGUUAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6S0Z_026 not in the Motif Atlas

Geometric match to HL_5TBW_012

Geometric discrepancy: 0.3567

The information below is about HL_5TBW_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.1

Basepair signature

cWW-F-F

Number of instances in this motif group

7

Unit IDs

6S0Z|1|A|G|925
6S0Z|1|A|G|926
6S0Z|1|A|G|927
6S0Z|1|A|C|928
6S0Z|1|A|C|929
6S0Z|1|A|G|937
6S0Z|1|A|G|938
6S0Z|1|A|U|939
6S0Z|1|A|U|940
6S0Z|1|A|A|941
6S0Z|1|A|C|942

Current chains

Chain A

23S ribosomal RNA

Nearby chains