HL_6S0Z_027

3D structure

PDB id

6S0Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22) in complex with erythromycin.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

UGAUAAGG

Length

8 nucleotides

Bulged bases

6S0Z|1|A|U|1002, 6S0Z|1|A|G|1005

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6S0Z_027 not in the Motif Atlas

Homologous match to HL_4WF9_027

Geometric discrepancy: 0.1043

The information below is about HL_4WF9_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

6S0Z|1|A|U|999
6S0Z|1|A|G|1000
6S0Z|1|A|A|1001
6S0Z|1|A|U|1002
6S0Z|1|A|A|1003
6S0Z|1|A|A|1004
6S0Z|1|A|G|1005
6S0Z|1|A|G|1006

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain K

50S ribosomal protein L16