HL_6S12_016

3D structure

PDB id

6S12 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGUUAAUG

Length

8 nucleotides

Bulged bases

6S12|1|A|U|590, 6S12|1|A|U|593

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6S12_016 not in the Motif Atlas

Homologous match to HL_4WF9_017

Geometric discrepancy: 0.2536

The information below is about HL_4WF9_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50318.1

Basepair signature

cWW-cSH-F-F

Number of instances in this motif group

1

Unit IDs

6S12|1|A|C|587
6S12|1|A|G|588
6S12|1|A|U|589
6S12|1|A|U|590
6S12|1|A|A|591
6S12|1|A|A|592
6S12|1|A|U|593
6S12|1|A|G|594

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain H

50S ribosomal protein L13

Chain O

50S ribosomal protein L20

Chain P

50S ribosomal protein L21