6S12 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6S12_001 | 1/A/59:68 | Pseudoknot with intercalation | homologous HL_7A0S_001 HL_17803.1 | |
| HL_6S12_003 | 1/A/122:127 | No text annotation | homologous HL_4WF9_003 HL_75660.6 | |
| HL_6S12_006 | 1/A/197:204 | No text annotation | homologous HL_7A0S_006 HL_48677.1 | |
| HL_6S12_007 | 1/A/249:255 | No text annotation | homologous HL_5J7L_141 NA | |
| HL_6S12_009 | 1/A/348:355 | T-loop with 2 stacked bulged bases | homologous HL_4WF9_010 HL_13999.1 | |
| HL_6S12_010 | 1/A/362:366 | No text annotation | homologous HL_7A0S_011 HL_75660.6 | |
| HL_6S12_011 | 1/A/370:378 | T-loop with unstacked turn | homologous HL_4WF9_012 HL_27670.3 | |
| HL_6S12_012 | 1/A/426:440 | No text annotation | ||
| HL_6S12_014 | 1/A/508:513 | GNRA | homologous HL_7A0S_015 HL_34789.1 | |
| HL_6S12_015 | 1/A/533:538 | GNRA | homologous HL_7RQB_016 NA | |
| HL_6S12_016 | 1/A/587:594 | No text annotation | homologous HL_4WF9_017 HL_50318.1 | |
| HL_6S12_017 | 1/A/609:618 | T-loop with 2 stacked bulged bases | homologous HL_4WF9_018 HL_33597.1 | |
| HL_6S12_018 | 1/A/655:661 | No text annotation | geometric HL_3IGI_004 HL_37569.1 | |
| HL_6S12_019 | 1/A/674:679 | GNRA | homologous HL_7RQB_020 NA | |
| HL_6S12_020 | 1/A/686:692 | No text annotation | homologous HL_7RQB_021 NA | |
| HL_6S12_022 | 1/A/789:798 | No text annotation | homologous HL_4WF9_023 HL_50204.1 | |
| HL_6S12_023 | 1/A/824:830 | No text annotation | homologous HL_7RQB_024 NA | |
| HL_6S12_024 | 1/A/871:876 | No text annotation | homologous HL_7A0S_024 HL_27530.1 | |
| HL_6S12_026 | 1/A/999:1006 | GNRA | homologous HL_4WF9_027 HL_34789.1 | |
| HL_6S12_027 | 1/A/1022:1029 | No text annotation | homologous HL_5J7L_160 NA | |
| HL_6S12_030 | 1/A/1260:1265 | GNRA | homologous HL_7A0S_031 HL_34789.1 | |
| HL_6S12_031 | 1/A/1318:1326 | T-loop with 2 stacked bulged bases | homologous HL_4WF9_032 HL_33597.1 | |
| HL_6S12_032 | 1/A/1361:1367 | Pseudoknot geometry with 3' bulge | homologous HL_7A0S_033 HL_49081.1 | |
| HL_6S12_033 | 1/A/1400:1405 | GNRA | homologous HL_4WF9_034 HL_34789.1 | |
| HL_6S12_034 | 1/A/1426:1435 | No text annotation | homologous HL_4WF9_035 HL_77449.1 | |
| HL_6S12_036 | 1/A/1612:1615 | Mini UNCG | homologous HL_7A0S_039 HL_90436.1 | |
| HL_6S12_037 | 1/A/1656:1663 | No text annotation | homologous HL_7RQB_040 NA | |
| HL_6S12_038 | 1/A/1673:1681 | GNRA with extra cWW | homologous HL_4WF9_039 HL_45359.1 | |
| HL_6S12_039 | 1/A/1735:1740 | UNCG | geometric HL_6QN3_001 NA | |
| HL_6S12_041 | 1/A/1779:1783 | No text annotation | homologous HL_7A0S_044 HL_80709.4 | |
| HL_6S12_042 | 1/A/1803:1815 | No text annotation | homologous HL_7A0S_045 HL_50951.1 | |
| HL_6S12_043 | 1/A/1833:1838 | GNRA | homologous HL_7RQB_046 NA | |
| HL_6S12_046 | 1/A/1976:1984 | No text annotation | homologous HL_5J7L_182 NA | |
| HL_6S12_047 | 1/A/2054:2063 | No text annotation | homologous HL_4WF9_047 HL_78372.1 | |
| HL_6S12_050 | 1/A/2275:2283 | No text annotation | homologous HL_5J7L_186 NA | |
| HL_6S12_051 | 1/A/2291:2303 | No text annotation | homologous HL_4WF9_050 HL_02042.1 | |
| HL_6S12_053 | 1/A/2351:2358 | Pseudoknot geometry | homologous HL_7RQB_056 NA | |
| HL_6S12_054 | 1/A/2382:2389 | GNRA with extra cWW | homologous HL_4WF9_053 HL_45359.1 | |
| HL_6S12_055 | 1/A/2401:2406 | GNRA | homologous HL_5J7L_191 NA | |
| HL_6S12_056 | 1/A/2431:2440 | No text annotation | homologous HL_4WF9_055 HL_51853.1 | |
| HL_6S12_059 | 1/A/2578:2584 | No text annotation | homologous HL_4WF9_058 HL_48677.1 | |
| HL_6S12_060 | 1/A/2621:2626 | GNRA | homologous HL_5J7L_196 NA | |
| HL_6S12_062 | 1/A/2728:2733 | Ribsomal LSU H95 | homologous HL_7A0S_064 HL_12125.1 | |
| HL_6S12_064 | 1/A/2839:2847 | No text annotation | homologous HL_4WF9_064 HL_37889.1 | |
| HL_6S12_065 | 1/A/2876:2881 | GNRA | homologous HL_4WF9_065 HL_34789.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6S12_002 | No text annotation | ||
| HL_6S12_004 | GNRA wlth tandem sheared | ||
| HL_6S12_005 | No text annotation | ||
| HL_6S12_008 | No text annotation | ||
| HL_6S12_013 | Pseudoknot geometry | ||
| HL_6S12_068 | No text annotation | ||
| HL_6S12_021 | No text annotation | ||
| HL_6S12_025 | No text annotation | ||
| HL_6S12_028 | No text annotation | ||
| HL_6S12_029 | No text annotation | ||
| HL_6S12_069 | No text annotation | ||
| HL_6S12_074 | No text annotation | ||
| HL_6S12_035 | No text annotation | ||
| HL_6S12_040 | No text annotation | ||
| HL_6S12_044 | No text annotation | ||
| HL_6S12_075 | No text annotation | ||
| HL_6S12_070 | No text annotation | ||
| HL_6S12_045 | No text annotation | ||
| HL_6S12_071 | No text annotation | ||
| HL_6S12_048 | No text annotation | ||
| HL_6S12_049 | No text annotation | ||
| HL_6S12_052 | No text annotation | ||
| HL_6S12_076 | No text annotation | ||
| HL_6S12_057 | No text annotation | ||
| HL_6S12_058 | No text annotation | ||
| HL_6S12_061 | GNRA | ||
| HL_6S12_063 | No text annotation | ||
| HL_6S12_072 | No text annotation | ||
| HL_6S12_073 | No text annotation | ||
| HL_6S12_066 | No text annotation | ||
| HL_6S12_067 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6S12_001 | 1/A/24:30, 1/A/555:561 | Triple sheared with non-canonical cWW | geometric IL_4WF9_001 IL_22311.1 | |
| IL_6S12_002 | 1/A/36:37, 1/A/488:490 | Single bulged A | homologous IL_7A0S_002 IL_14190.1 | |
| IL_6S12_003 | 1/A/42:44, 1/A/480:483 | Minor groove platform with extra cWW | homologous IL_4WF9_003 IL_82096.1 | |
| IL_6S12_005 | 1/A/152:153, 1/A/175:177 | Major groove platform | geometric IL_4LFB_024 IL_48076.7 | |
| IL_6S12_006 | 1/A/186:187, 1/A/215:217 | Single stack bend | homologous IL_5J7L_249 NA | |
| IL_6S12_007 | 1/A/190:197, 1/A/204:212 | 9x8 Sarcin-Ricin; G-bulge | geometric IL_4WF9_008 IL_93502.1 | |
| IL_6S12_008 | 1/A/241:248, 1/A/256:262 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_4WF9_009 IL_62167.1 | |
| IL_6S12_011 | 1/A/527:530, 1/A/541:554 | No text annotation | geometric IL_4WF9_015 IL_44923.1 | |
| IL_6S12_012 | 1/A/581:584, 1/A/597:600 | Double sheared | homologous IL_5J7L_256 NA | |
| IL_6S12_013 | 1/A/607:609, 1/A/618:620 | Isolated non-canonical cWW pair | geometric IL_4WF9_017 IL_71625.1 | |
| IL_6S12_014 | 1/A/638:640, 1/A/705:707 | Isolated non-canonical cWW pair | homologous IL_4WF9_018 IL_71625.1 | |
| IL_6S12_015 | 1/A/649:653, 1/A/663:667 | AAA cross-strand stack | homologous IL_4WF9_019 IL_66798.3 | |
| IL_6S12_016 | 1/A/717:719, 1/A/851:853 | No text annotation | geometric IL_7RQB_017 NA | |
| IL_6S12_017 | 1/A/719:723, 1/A/844:851 | tHW-tHW cross-strand stack | homologous IL_7A0S_015 IL_73855.1 | |
| IL_6S12_018 | 1/A/742:743, 1/A/808:810 | Single bulged A | geometric IL_4V9F_025 IL_14190.1 | |
| IL_6S12_019 | 1/A/747:748, 1/A/773:775 | Single bulged G | geometric IL_7A0S_017 IL_28408.1 | |
| IL_6S12_131 | 1/A/748:752, 1/A/769:773 | Triple sheared | homologous IL_9DFE_019 IL_15190.1 | |
| IL_6S12_022 | 1/A/783:785, 1/A/802:803 | Major groove platform | homologous IL_4WF9_026 IL_48076.7 | |
| IL_6S12_023 | 1/A/820:822, 1/A/832:836 | Multiple bulged bases | homologous IL_7RQB_023 NA | |
| IL_6S12_024 | 1/A/881:883, 1/A/984:987 | Other IL | geometric IL_5TBW_064 NA | |
| IL_6S12_025 | 1/A/889:893, 1/A/975:978 | No text annotation | homologous IL_4WF9_029 IL_01742.1 | |
| IL_6S12_026 | 1/A/897:898, 1/A/969:971 | No text annotation | ||
| IL_6S12_027 | 1/A/901:907, 1/A/960:966 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_4WF9_031 IL_94128.1 | |
| IL_6S12_028 | 1/A/907:908, 1/A/958:960 | Minor groove platform | homologous IL_7RQB_028 NA | |
| IL_6S12_029 | 1/A/909:913, 1/A/954:957 | C-loop | homologous IL_4WF9_033 IL_16301.1 | |
| IL_6S12_031 | 1/A/1038:1040, 1/A/1203:1204 | Single bulged C | homologous IL_5J7L_276 NA | |
| IL_6S12_032 | 1/A/1042:1046, 1/A/1197:1201 | UAA/GAN | homologous IL_7A0S_033 IL_08938.1 | |
| IL_6S12_033 | 1/A/1048:1055, 1/A/1194:1195 | SSU/LSU pseudoknot | homologous IL_5J7L_278 NA | |
| IL_6S12_034 | 1/A/1055:1057, 1/A/1193:1194 | Single bulged U | geometric IL_7RQB_038 NA | |
| IL_6S12_035 | 1/A/1062:1068, 1/A/1184:1188 | Kink-turn related | geometric IL_4WF9_039 IL_57188.6 | |
| IL_6S12_036 | 1/A/1068:1074, 1/A/1168:1184 | No text annotation | geometric IL_4WF9_040 IL_50715.4 | |
| IL_6S12_043 | 1/A/1235:1237, 1/A/1285:1288 | Isolated cWS basepair | homologous IL_4WF9_044 IL_42997.4 | |
| IL_6S12_044 | 1/A/1243:1245, 1/A/1277:1279 | Isolated cWH basepair | homologous IL_4WF9_045 IL_10892.1 | |
| IL_6S12_045 | 1/A/1246:1253, 1/A/1272:1276 | Kink-turn | homologous IL_5J7L_288 NA | |
| IL_6S12_046 | 1/A/1257:1259, 1/A/1266:1268 | Intercalated cWW | homologous IL_4WF9_047 IL_61702.1 | |
| IL_6S12_047 | 1/A/1300:1307, 1/A/2038:2044 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_4WF9_048 IL_62167.1 | |
| IL_6S12_048 | 1/A/1356:1360, 1/A/1368:1370 | C-loop | homologous IL_5J7L_291 NA | |
| IL_6S12_133 | 1/A/1388:1390, 1/A/1416:1417 | Single stack bend | geometric IL_7A0S_005 IL_15011.1 | |
| IL_6S12_049 | 1/A/1388:1392, 1/A/1413:1417 | UAA/GAN | homologous IL_7A0S_048 IL_89021.3 | |
| IL_6S12_134 | 1/A/1390:1392, 1/A/1413:1416 | No text annotation | ||
| IL_6S12_050 | 1/A/1394:1398, 1/A/1407:1411 | tSH-tHW-tHS | homologous IL_4WF9_052 IL_05821.1 | |
| IL_6S12_051 | 1/A/1477:1480, 1/A/1604:1607 | No text annotation | ||
| IL_6S12_117 | 1/A/1477:1511, 1/A/1570:1607 | No text annotation | ||
| IL_6S12_057 | 1/A/1695:1700, 1/A/2031:2033 | No text annotation | homologous IL_5J7L_304 NA | |
| IL_6S12_135 | 1/A/1707:1709, 1/A/2022:2024 | Isolated tWW turn | homologous IL_4WF9_063 IL_10432.1 | |
| IL_6S12_059 | 1/A/1710:1713, 1/A/2020:2021 | Major groove platform; stack outside cWW | geometric IL_5TBW_076 NA | |
| IL_6S12_120 | 1/A/1710:1718, 1/A/2017:2021 | No text annotation | homologous IL_5J7L_386 NA | |
| IL_6S12_060 | 1/A/1713:1718, 1/A/2017:2020 | Intercalated tWH | homologous IL_5J7L_307 NA | |
| IL_6S12_061 | 1/A/1730:1735, 1/A/1740:1746 | tSH-tSH-tHH-tHS | homologous IL_5J7L_308 NA | |
| IL_6S12_063 | 1/A/1797:1798, 1/A/2007:2009 | Single bulged A | homologous IL_7A0S_064 IL_14190.1 | |
| IL_6S12_064 | 1/A/1825:1831, 1/A/1840:1848 | Kink-turn related | homologous IL_7RQB_070 NA | |
| IL_6S12_121 | 1/A/1868:1869, 1/A/1925:1928 | Major groove intercalation | homologous IL_4WF9_071 IL_78536.1 | |
| IL_6S12_071 | 1/A/2077:2079, 1/A/2644:2645 | Major groove platform | homologous IL_4WF9_078 IL_48076.7 | |
| IL_6S12_072 | 1/A/2081:2083, 1/A/2639:2642 | No text annotation | homologous IL_4WF9_079 IL_80025.1 | |
| IL_6S12_073 | 1/A/2094:2096, 1/A/2469:2470 | Single bulged U | homologous IL_7RQB_080 NA | |
| IL_6S12_074 | 1/A/2097:2098, 1/A/2465:2468 | Minor groove platform | homologous IL_7RQB_081 NA | |
| IL_6S12_075 | 1/A/2108:2110, 1/A/2263:2266 | Isolated tHS basepair with bulges | homologous IL_5J7L_325 NA | |
| IL_6S12_082 | 1/A/2377:2380, 1/A/2391:2394 | Double sheared | homologous IL_5J7L_333 NA | |
| IL_6S12_083 | 1/A/2428:2430, 1/A/2441:2442 | Single bulged U | homologous IL_5J7L_334 NA | |
| IL_6S12_084 | 1/A/2480:2481, 1/A/2525:2527 | Single stack bend | geometric IL_7RQB_091 NA | |
| IL_6S12_085 | 1/A/2481:2482, 1/A/2523:2525 | Major groove platform | homologous IL_4WF9_090 IL_48076.7 | |
| IL_6S12_086 | 1/A/2484:2486, 1/A/2520:2521 | Major groove platform | geometric IL_4WF9_091 IL_48076.7 | |
| IL_6S12_126 | 1/A/2484:2488, 1/A/2516:2521 | No text annotation | ||
| IL_6S12_087 | 1/A/2486:2488, 1/A/2516:2520 | Major groove minor groove platform with extra cWW | homologous IL_7RQB_094 NA | |
| IL_6S12_088 | 1/A/2493:2497, 1/A/2507:2511 | Double sheared with non-canonical cWW | homologous IL_4WF9_093 IL_87767.1 | |
| IL_6S12_127 | 1/A/2534:2535, 1/A/2607:2609 | No text annotation | homologous IL_9DFE_096 IL_46637.1 | |
| IL_6S12_090 | 1/A/2537:2539, 1/A/2601:2605 | Isolated non-canonical cWW with bulges | homologous IL_4WF9_095 IL_68118.1 | |
| IL_6S12_091 | 1/A/2539:2540, 1/A/2598:2601 | No text annotation | geometric IL_5J7L_341 NA | |
| IL_6S12_092 | 1/A/2549:2550, 1/A/2567:2570 | Major groove platform with intercalation | homologous IL_7RQB_099 NA | |
| IL_6S12_093 | 1/A/2618:2619, 1/A/2628:2630 | Major groove platform | geometric IL_1G1X_002 NA | |
| IL_6S12_094 | 1/A/2663:2667, 1/A/2801:2809 | tSH-tHS-tHW | homologous IL_4WF9_099 IL_04638.4 | |
| IL_6S12_095 | 1/A/2670:2672, 1/A/2797:2798 | Single stack bend | geometric IL_7A0S_054 IL_15011.1 | |
| IL_6S12_097 | 1/A/2707:2711, 1/A/2752:2754 | C-loop | homologous IL_4WF9_101 IL_63596.12 | |
| IL_6S12_098 | 1/A/2714:2718, 1/A/2745:2749 | UAA/GAN related, with intercalation | homologous IL_5J7L_348 NA | |
| IL_6S12_099 | 1/A/2722:2723, 1/A/2738:2741 | Multiple bulged bases | homologous IL_5J7L_349 NA | |
| IL_6S12_100 | 1/A/2764:2769, 1/A/2789:2794 | UAA/GAN with extra cWW | homologous IL_7A0S_098 IL_91079.1 | |
| IL_6S12_101 | 1/A/2816:2831, 1/A/2909:2913 | No text annotation | ||
| IL_6S12_102 | 1/A/2858:2859, 1/A/2898:2900 | Single bulged C | homologous IL_7RQB_108 NA | |
| IL_6S12_129 | 1/A/2863:2865, 1/A/2891:2894 | No text annotation | homologous IL_4WF9_107 IL_05502.1 | |
| IL_6S12_104 | 1/A/2867:2872, 1/A/2885:2889 | tHS double platform | homologous IL_4WF9_108 IL_48489.1 | |
| IL_6S12_130 | 1/B/69:80, 1/B/91:102 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6S12_004 | No text annotation | ||
| IL_6S12_110 | Kink-turn | ||
| IL_6S12_009 | No text annotation | ||
| IL_6S12_111 | No text annotation | ||
| IL_6S12_112 | No text annotation | ||
| IL_6S12_010 | No text annotation | ||
| IL_6S12_020 | Triple sheared with non-canonical cWW | ||
| IL_6S12_021 | No text annotation | ||
| IL_6S12_113 | Isolated cWS basepair | ||
| IL_6S12_030 | No text annotation | ||
| IL_6S12_037 | No text annotation | ||
| IL_6S12_038 | No text annotation | ||
| IL_6S12_132 | No text annotation | ||
| IL_6S12_114 | No text annotation | ||
| IL_6S12_039 | Kink-turn | ||
| IL_6S12_040 | No text annotation | ||
| IL_6S12_041 | No text annotation | ||
| IL_6S12_115 | No text annotation | ||
| IL_6S12_042 | No text annotation | ||
| IL_6S12_116 | No text annotation | ||
| IL_6S12_052 | No text annotation | ||
| IL_6S12_053 | No text annotation | ||
| IL_6S12_054 | No text annotation | ||
| IL_6S12_118 | No text annotation | ||
| IL_6S12_055 | No text annotation | ||
| IL_6S12_119 | Isolated cWS basepair | ||
| IL_6S12_056 | No text annotation | ||
| IL_6S12_058 | No text annotation | ||
| IL_6S12_062 | No text annotation | ||
| IL_6S12_065 | Minor groove platform, major groove intercalation | ||
| IL_6S12_066 | Isolated non-canonical cWW with bulges | ||
| IL_6S12_067 | Single stack bend | ||
| IL_6S12_068 | No text annotation | ||
| IL_6S12_136 | UAA/GAN with extra stack | ||
| IL_6S12_069 | Triple sheared | ||
| IL_6S12_137 | No text annotation | ||
| IL_6S12_122 | No text annotation | ||
| IL_6S12_070 | No text annotation | ||
| IL_6S12_123 | Isolated non-canonical cWW pair | ||
| IL_6S12_076 | Tandem non-canonical cWW pairs | ||
| IL_6S12_124 | No text annotation | ||
| IL_6S12_077 | No text annotation | ||
| IL_6S12_078 | No text annotation | ||
| IL_6S12_079 | No text annotation | ||
| IL_6S12_080 | Single bulged G | ||
| IL_6S12_081 | Isolated tHS basepair with bulges | ||
| IL_6S12_125 | No text annotation | ||
| IL_6S12_089 | Major groove platform with extra pair | ||
| IL_6S12_096 | No text annotation | ||
| IL_6S12_128 | Sarcin-Ricin target in LSU H95; G-bulge | ||
| IL_6S12_103 | Multiple bulged bases with non-canonical cWW | ||
| IL_6S12_105 | No text annotation | ||
| IL_6S12_106 | No text annotation | ||
| IL_6S12_107 | Major groove intercalation | ||
| IL_6S12_108 | No text annotation | ||
| IL_6S12_109 | Symmetric double minor groove platform |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6S12_001 | 1/A/30:31, 1/A/520:527, 1/A/554:555 | No text annotation | geometric J3_4V9F_011 J3_68715.1 | |
| J3_6S12_013 | 1/A/30:31, 1/A/520:530, 1/A/541:555 | No text annotation | homologous J3_4WF9_011 J3_17917.1 | |
| J3_6S12_014 | 1/A/32:35, 1/A/491:507, 1/A/514:519 | No text annotation | homologous J3_9DFE_003 J3_07616.1 | |
| J3_6S12_002 | 1/A/56:57, 1/A/70:76, 1/A/109:113 | No text annotation | homologous J3_7A0S_002 J3_01004.1 | |
| J3_6S12_003 | 1/A/272:276, 1/A/295:302, 1/A/415:416 | No text annotation | homologous J3_7RQB_003 NA | |
| J3_6S12_015 | 1/A/339:344, 1/A/359:368, 1/A/380:385 | No text annotation | geometric J3_4V9F_015 J3_59706.1 | |
| J3_6S12_022 | 1/A/340:344, 1/A/359:368, 1/A/380:384 | No text annotation | homologous J3_4WF9_015 J3_77124.1 | |
| J3_6S12_004 | 1/A/728:734, 1/A/818:820, 1/A/836:839 | No text annotation | homologous J3_5J7L_038 NA | |
| J3_6S12_005 | 1/A/743:745, 1/A/777:781, 1/A/805:808 | No text annotation | homologous J3_7RQB_005 NA | |
| J3_6S12_006 | 1/A/1335:1340, 1/A/1669:1671, 1/A/1683:1686 | No text annotation | homologous J3_4WF9_004 J3_32852.7 | |
| J3_6S12_007 | 1/A/1342:1346, 1/A/1649:1655, 1/A/1664:1667 | No text annotation | homologous J3_4WF9_005 J3_68164.1 | |
| J3_6S12_023 | 1/A/1381:1387, 1/A/1418:1422, 1/A/1439:1440 | No text annotation | homologous J3_7A0S_018 J3_94309.1 | |
| J3_6S12_018 | 1/A/1468:1473, 1/A/1611:1612, 1/A/1615:1621 | No text annotation | homologous J3_7A0S_019 J3_34864.3 | |
| J3_6S12_008 | 1/A/2118:2120, 1/A/2223:2229, 1/A/2248:2255 | No text annotation | ||
| J3_6S12_019 | 1/A/2309:2312, 1/A/2410:2422, 1/A/2448:2454 | No text annotation | homologous J3_4WF9_019 J3_39320.1 | |
| J3_6S12_009 | 1/A/2322:2324, 1/A/2348:2350, 1/A/2359:2364 | No text annotation | geometric J3_4V9F_008 J3_05327.1 | |
| J3_6S12_020 | 1/A/2322:2326, 1/A/2344:2350, 1/A/2359:2364 | No text annotation | homologous J3_5J7L_071 NA | |
| J3_6S12_010 | 1/A/2544:2547, 1/A/2572:2574, 1/A/2588:2594 | No text annotation | homologous J3_4WF9_009 J3_32601.6 | |
| J3_6S12_021 | 1/A/2816:2818, 1/A/2826:2831, 1/A/2909:2913 | No text annotation | ||
| J3_6S12_011 | 1/A/2834:2835, 1/A/2851:2856, 1/A/2902:2906 | No text annotation | homologous J3_4WF9_021 J3_76911.2 | |
| J4_6S12_001 | 1/A/271:272, 1/A/416:421, 1/A/445:452, 1/A/467:470 | No text annotation | homologous J4_5J7L_018 NA | |
| J4_6S12_010 | 1/A/340:344, 1/A/359:362, 1/A/366:368, 1/A/380:384 | No text annotation | homologous J4_9DFE_002 J4_16174.1 | |
| J4_6S12_003 | 1/A/644:647, 1/A/669:673, 1/A/680:683, 1/A/695:701 | No text annotation | homologous J4_5J7L_020 NA | |
| J4_6S12_004 | 1/A/1308:1313, 1/A/1331:1332, 1/A/1689:1693, 1/A/2035:2037 | No text annotation | ||
| J4_6S12_005 | 1/A/1347:1351, 1/A/1375:1380, 1/A/1441:1442, 1/A/1641:1648 | No text annotation | ||
| J4_6S12_006 | 1/A/1799:1803, 1/A/1815:1819, 1/A/1854:1857, 1/A/2002:2006 | No text annotation | homologous J4_4WF9_007 J4_61477.6 | |
| J4_6S12_007 | 1/A/1860:1863, 1/A/1931:1933, 1/A/1951:1961, 1/A/1991:1999 | No text annotation | ||
| J4_6S12_008 | 1/A/2312:2317, 1/A/2369:2374, 1/A/2397:2399, 1/A/2408:2410 | No text annotation | ||
| J4_6S12_009 | 1/A/2672:2673, 1/A/2701:2703, 1/A/2758:2762, 1/A/2796:2797 | No text annotation | ||
| J5_6S12_001 | 1/A/45:47, 1/A/180:186, 1/A/217:238, 1/A/265:269, 1/A/472:479 | No text annotation | ||
| J5_6S12_002 | 1/A/47:54, 1/A/115:120, 1/A/129:130, 1/A/149:151, 1/A/178:180 | No text annotation | homologous J5_9DFE_001 J5_27223.1 | |
| J5_6S12_003 | 1/A/627:632, 1/A/713:716, 1/A/854:857, 1/A/1234:1235, 1/A/1288:1294 | No text annotation | homologous J5_4WF9_004 J5_74302.6 | |
| J5_6S12_004 | 1/A/1718:1726, 1/A/1750:1751, 1/A/1778:1779, 1/A/1783:1791, 1/A/2015:2017 | No text annotation | homologous J5_4WF9_005 J5_99177.1 | |
| J5_6S12_005 | 1/A/2084:2091, 1/A/2473:2480, 1/A/2527:2534, 1/A/2609:2615, 1/A/2633:2638 | No text annotation | ||
| J5_6S12_006 | 1/A/2101:2104, 1/A/2270:2273, 1/A/2285:2286, 1/A/2308:2309, 1/A/2454:2462 | No text annotation | homologous J5_7A0S_007 J5_39529.2 | |
| J6_6S12_001 | 1/A/2101:2104, 1/A/2270:2273, 1/A/2285:2286, 1/A/2308:2312, 1/A/2410:2422, 1/A/2448:2462 | No text annotation | ||
| J7_6S12_001 | 1/A/862:867, 1/A/880:881, 1/A/987:990, 1/A/1015:1020, 1/A/1031:1035, 1/A/1207:1209, 1/A/1223:1229 | No text annotation | ||
| J10_6S12_001 | 1/A/8:15, 1/A/570:578, 1/A/603:607, 1/A/620:622, 1/A/1299:1300, 1/A/2044:2050, 1/A/2067:2070, 1/A/2652:2657, 1/A/2815:2816, 1/A/2913:2914 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_6S12_016 | No text annotation | ||
| J3_6S12_017 | No text annotation | ||
| J3_6S12_012 | No text annotation | ||
| J4_6S12_002 | No text annotation |
Coloring options: