HL_6S12_025

3D structure

PDB id

6S12 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGGCCGGUUAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6S12_025 not in the Motif Atlas

Geometric match to HL_361D_002

Geometric discrepancy: 0.225

The information below is about HL_361D_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

6S12|1|A|G|925
6S12|1|A|G|926
6S12|1|A|G|927
6S12|1|A|C|928
6S12|1|A|C|929
6S12|1|A|G|937
6S12|1|A|G|938
6S12|1|A|U|939
6S12|1|A|U|940
6S12|1|A|A|941
6S12|1|A|C|942

Current chains

Chain A

23S ribosomal RNA

Nearby chains