HL_6S12_047

3D structure

PDB id

6S12 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

6S12|1|A|A|2057, 6S12|1|A|A|2058, 6S12|1|A|G|2059

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6S12_047 not in the Motif Atlas

Homologous match to HL_4WF9_047

Geometric discrepancy: 0.1493

The information below is about HL_4WF9_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61996.2

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

8

Unit IDs

6S12|1|A|G|2054
6S12|1|A|U|2055
6S12|1|A|G|2056
6S12|1|A|A|2057
6S12|1|A|A|2058
6S12|1|A|G|2059
6S12|1|A|A|2060
6S12|1|A|U|2061
6S12|1|A|G|2062
6S12|1|A|C|2063

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3