HL_6S12_051

3D structure

PDB id

6S12 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUAAAAGGUAACG

Length

13 nucleotides

Bulged bases

6S12|1|A|A|2295, 6S12|1|A|C|2302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6S12_051 not in the Motif Atlas

Homologous match to HL_4WF9_050

Geometric discrepancy: 0.1449

The information below is about HL_4WF9_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02042.1

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

12

Unit IDs

6S12|1|A|C|2291
6S12|1|A|U|2292
6S12|1|A|A|2293
6S12|1|A|A|2294
6S12|1|A|A|2295
6S12|1|A|A|2296
6S12|1|A|G|2297
6S12|1|A|G|2298
6S12|1|A|U|2299
6S12|1|A|A|2300
6S12|1|A|A|2301
6S12|1|A|C|2302
6S12|1|A|G|2303

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L16

Chain U

50S ribosomal protein L27