HL_6S12_056

3D structure

PDB id

6S12 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGCAUGGAAG

Length

10 nucleotides

Bulged bases

6S12|1|A|C|2433

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6S12_056 not in the Motif Atlas

Homologous match to HL_4WF9_055

Geometric discrepancy: 0.2771

The information below is about HL_4WF9_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53454.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

6S12|1|A|C|2431
6S12|1|A|G|2432
6S12|1|A|C|2433
6S12|1|A|A|2434
6S12|1|A|U|2435
6S12|1|A|G|2436
6S12|1|A|G|2437
6S12|1|A|A|2438
6S12|1|A|A|2439
6S12|1|A|G|2440

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain J

50S ribosomal protein L15