HL_6S12_065

3D structure

PDB id

6S12 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGUGAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6S12_065 not in the Motif Atlas

Homologous match to HL_4WF9_065

Geometric discrepancy: 0.2125

The information below is about HL_4WF9_065

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

6S12|1|A|G|2876
6S12|1|A|G|2877
6S12|1|A|U|2878
6S12|1|A|G|2879
6S12|1|A|A|2880
6S12|1|A|C|2881

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L19