HL_6S13_006

3D structure

PDB id

6S13 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.58 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

6S13|1|A|A|199

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6S13_006 not in the Motif Atlas

Geometric match to HL_7RQB_006

Geometric discrepancy: 0.1491

The information below is about HL_7RQB_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06192.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

14

Unit IDs

6S13|1|A|G|197
6S13|1|A|A|198
6S13|1|A|A|199
6S13|1|A|A|200
6S13|1|A|C|201
6S13|1|A|A|202
6S13|1|A|U|203
6S13|1|A|C|204

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain J

50S ribosomal protein L15

Chain V

50S ribosomal protein L28