6S13 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6S13_001 | Pseudoknot with intercalation | ||
| HL_6S13_002 | No text annotation | ||
| HL_6S13_003 | No text annotation | ||
| HL_6S13_004 | GNRA wlth tandem sheared | ||
| HL_6S13_005 | No text annotation | ||
| HL_6S13_006 | No text annotation | ||
| HL_6S13_007 | No text annotation | ||
| HL_6S13_008 | No text annotation | ||
| HL_6S13_009 | T-loop with 2 stacked bulged bases | ||
| HL_6S13_010 | No text annotation | ||
| HL_6S13_011 | T-loop with unstacked turn | ||
| HL_6S13_012 | No text annotation | ||
| HL_6S13_013 | Pseudoknot geometry | ||
| HL_6S13_014 | GNRA | ||
| HL_6S13_015 | GNRA | ||
| HL_6S13_016 | No text annotation | ||
| HL_6S13_102 | No text annotation | ||
| HL_6S13_017 | T-loop with 2 stacked bulged bases | ||
| HL_6S13_018 | No text annotation | ||
| HL_6S13_019 | GNRA | ||
| HL_6S13_020 | No text annotation | ||
| HL_6S13_110 | No text annotation | ||
| HL_6S13_021 | No text annotation | ||
| HL_6S13_022 | No text annotation | ||
| HL_6S13_023 | No text annotation | ||
| HL_6S13_024 | No text annotation | ||
| HL_6S13_103 | No text annotation | ||
| HL_6S13_025 | No text annotation | ||
| HL_6S13_026 | GNRA | ||
| HL_6S13_027 | No text annotation | ||
| HL_6S13_104 | No text annotation | ||
| HL_6S13_028 | No text annotation | ||
| HL_6S13_105 | No text annotation | ||
| HL_6S13_029 | No text annotation | ||
| HL_6S13_030 | GNRA | ||
| HL_6S13_031 | T-loop with 2 stacked bulged bases | ||
| HL_6S13_032 | Pseudoknot geometry with 3' bulge | ||
| HL_6S13_033 | GNRA variation | ||
| HL_6S13_034 | No text annotation | ||
| HL_6S13_035 | No text annotation | ||
| HL_6S13_036 | No text annotation | ||
| HL_6S13_037 | Mini UNCG | ||
| HL_6S13_038 | No text annotation | ||
| HL_6S13_039 | GNRA with extra cWW | ||
| HL_6S13_040 | UNCG | ||
| HL_6S13_041 | No text annotation | ||
| HL_6S13_042 | No text annotation | ||
| HL_6S13_043 | No text annotation | ||
| HL_6S13_044 | GNRA | ||
| HL_6S13_045 | No text annotation | ||
| HL_6S13_111 | No text annotation | ||
| HL_6S13_106 | No text annotation | ||
| HL_6S13_046 | Mini UNCG | ||
| HL_6S13_047 | No text annotation | ||
| HL_6S13_048 | No text annotation | ||
| HL_6S13_049 | No text annotation | ||
| HL_6S13_050 | No text annotation | ||
| HL_6S13_051 | No text annotation | ||
| HL_6S13_052 | No text annotation | ||
| HL_6S13_053 | No text annotation | ||
| HL_6S13_054 | No text annotation | ||
| HL_6S13_055 | GNRA with extra cWW | ||
| HL_6S13_056 | GNRA | ||
| HL_6S13_057 | No text annotation | ||
| HL_6S13_058 | No text annotation | ||
| HL_6S13_059 | No text annotation | ||
| HL_6S13_060 | No text annotation | ||
| HL_6S13_061 | GNRA | ||
| HL_6S13_062 | No text annotation | ||
| HL_6S13_063 | Ribsomal LSU H95 | ||
| HL_6S13_064 | No text annotation | ||
| HL_6S13_112 | No text annotation | ||
| HL_6S13_065 | No text annotation | ||
| HL_6S13_066 | No text annotation | ||
| HL_6S13_067 | GNRA | ||
| HL_6S13_068 | No text annotation | ||
| HL_6S13_069 | No text annotation | ||
| HL_6S13_070 | No text annotation | ||
| HL_6S13_071 | No text annotation | ||
| HL_6S13_072 | No text annotation | ||
| HL_6S13_073 | No text annotation | ||
| HL_6S13_074 | No text annotation | ||
| HL_6S13_075 | No text annotation | ||
| HL_6S13_076 | No text annotation | ||
| HL_6S13_077 | No text annotation | ||
| HL_6S13_078 | UNCG | ||
| HL_6S13_079 | No text annotation | ||
| HL_6S13_080 | No text annotation | ||
| HL_6S13_081 | No text annotation | ||
| HL_6S13_082 | Mini UNCG | ||
| HL_6S13_083 | GNRA | ||
| HL_6S13_084 | No text annotation | ||
| HL_6S13_107 | No text annotation | ||
| HL_6S13_085 | GNRA | ||
| HL_6S13_086 | No text annotation | ||
| HL_6S13_087 | No text annotation | ||
| HL_6S13_108 | GNRA with extra near cWW | ||
| HL_6S13_088 | GNRA | ||
| HL_6S13_089 | GNRA | ||
| HL_6S13_090 | No text annotation | ||
| HL_6S13_091 | No text annotation | ||
| HL_6S13_092 | No text annotation | ||
| HL_6S13_093 | GNRA | ||
| HL_6S13_094 | No text annotation | ||
| HL_6S13_109 | No text annotation | ||
| HL_6S13_095 | No text annotation | ||
| HL_6S13_096 | No text annotation | ||
| HL_6S13_097 | No text annotation | ||
| HL_6S13_098 | No text annotation | ||
| HL_6S13_113 | No text annotation | ||
| HL_6S13_099 | No text annotation | ||
| HL_6S13_100 | No text annotation | ||
| HL_6S13_101 | GNRA |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6S13_001 | Triple sheared with non-canonical cWW | ||
| IL_6S13_002 | Single bulged A | ||
| IL_6S13_003 | Minor groove platform with extra cWW | ||
| IL_6S13_004 | Kink-turn | ||
| IL_6S13_005 | Major groove platform | ||
| IL_6S13_006 | Single stack bend | ||
| IL_6S13_007 | 9x8 Sarcin-Ricin; G-bulge | ||
| IL_6S13_008 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_6S13_009 | No text annotation | ||
| IL_6S13_163 | No text annotation | ||
| IL_6S13_010 | No text annotation | ||
| IL_6S13_011 | Double sheared | ||
| IL_6S13_012 | Isolated non-canonical cWW pair | ||
| IL_6S13_013 | Isolated non-canonical cWW pair | ||
| IL_6S13_014 | AAA cross-strand stack | ||
| IL_6S13_015 | No text annotation | ||
| IL_6S13_016 | tHW-tHW cross-strand stack | ||
| IL_6S13_017 | Single bulged A | ||
| IL_6S13_018 | Single bulged G | ||
| IL_6S13_019 | No text annotation | ||
| IL_6S13_164 | No text annotation | ||
| IL_6S13_165 | Single stack bend | ||
| IL_6S13_020 | No text annotation | ||
| IL_6S13_021 | Major groove platform | ||
| IL_6S13_022 | Multiple bulged bases | ||
| IL_6S13_023 | No text annotation | ||
| IL_6S13_024 | No text annotation | ||
| IL_6S13_025 | No text annotation | ||
| IL_6S13_026 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_6S13_027 | Minor groove platform | ||
| IL_6S13_028 | C-loop | ||
| IL_6S13_029 | No text annotation | ||
| IL_6S13_030 | Single bulged C | ||
| IL_6S13_031 | UAA/GAN | ||
| IL_6S13_032 | SSU/LSU pseudoknot | ||
| IL_6S13_033 | Single bulged U | ||
| IL_6S13_034 | Kink-turn related | ||
| IL_6S13_035 | No text annotation | ||
| IL_6S13_036 | No text annotation | ||
| IL_6S13_037 | Isolated non-canonical cWW pair | ||
| IL_6S13_038 | No text annotation | ||
| IL_6S13_166 | No text annotation | ||
| IL_6S13_039 | No text annotation | ||
| IL_6S13_040 | No text annotation | ||
| IL_6S13_041 | No text annotation | ||
| IL_6S13_042 | No text annotation | ||
| IL_6S13_043 | No text annotation | ||
| IL_6S13_044 | Isolated cWS basepair | ||
| IL_6S13_045 | Isolated cWH basepair | ||
| IL_6S13_046 | Kink-turn | ||
| IL_6S13_047 | Intercalated cWW | ||
| IL_6S13_048 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_6S13_049 | C-loop | ||
| IL_6S13_050 | UAA/GAN | ||
| IL_6S13_051 | tSH-tHW-tHS | ||
| IL_6S13_167 | No text annotation | ||
| IL_6S13_052 | No text annotation | ||
| IL_6S13_053 | No text annotation | ||
| IL_6S13_054 | No text annotation | ||
| IL_6S13_055 | No text annotation | ||
| IL_6S13_056 | No text annotation | ||
| IL_6S13_057 | No text annotation | ||
| IL_6S13_058 | No text annotation | ||
| IL_6S13_168 | No text annotation | ||
| IL_6S13_169 | No text annotation | ||
| IL_6S13_059 | Major groove platform; stack outside cWW | ||
| IL_6S13_060 | Intercalated tWH | ||
| IL_6S13_061 | tSH-tSH-tHH-tHS | ||
| IL_6S13_062 | No text annotation | ||
| IL_6S13_063 | Single bulged A | ||
| IL_6S13_064 | Kink-turn related | ||
| IL_6S13_065 | Minor groove platform, major groove intercalation | ||
| IL_6S13_170 | Major groove intercalation | ||
| IL_6S13_066 | Isolated non-canonical cWW with bulges | ||
| IL_6S13_067 | Major groove platform | ||
| IL_6S13_068 | No text annotation | ||
| IL_6S13_171 | No text annotation | ||
| IL_6S13_193 | UAA/GAN with extra stack | ||
| IL_6S13_194 | No text annotation | ||
| IL_6S13_069 | No text annotation | ||
| IL_6S13_070 | No text annotation | ||
| IL_6S13_071 | Major groove platform | ||
| IL_6S13_072 | No text annotation | ||
| IL_6S13_073 | Single bulged U | ||
| IL_6S13_074 | Minor groove platform | ||
| IL_6S13_075 | Isolated tHS basepair with bulges | ||
| IL_6S13_076 | No text annotation | ||
| IL_6S13_172 | No text annotation | ||
| IL_6S13_195 | No text annotation | ||
| IL_6S13_077 | No text annotation | ||
| IL_6S13_078 | No text annotation | ||
| IL_6S13_079 | No text annotation | ||
| IL_6S13_080 | Single bulged G | ||
| IL_6S13_081 | Isolated tHS basepair with bulges | ||
| IL_6S13_082 | Double sheared | ||
| IL_6S13_083 | Single bulged U | ||
| IL_6S13_196 | Single stack bend | ||
| IL_6S13_084 | Major groove platform | ||
| IL_6S13_173 | No text annotation | ||
| IL_6S13_085 | Major groove platform | ||
| IL_6S13_086 | Major groove minor groove platform with extra cWW | ||
| IL_6S13_087 | Double sheared with non-canonical cWW | ||
| IL_6S13_174 | No text annotation | ||
| IL_6S13_088 | Major groove platform with extra pair | ||
| IL_6S13_089 | Isolated non-canonical cWW with bulges | ||
| IL_6S13_090 | No text annotation | ||
| IL_6S13_091 | No text annotation | ||
| IL_6S13_092 | Major groove platform | ||
| IL_6S13_093 | tSH-tHS-tHW | ||
| IL_6S13_094 | Single stack bend | ||
| IL_6S13_095 | No text annotation | ||
| IL_6S13_096 | Single stack bend | ||
| IL_6S13_097 | C-loop | ||
| IL_6S13_098 | UAA/GAN related, with intercalation | ||
| IL_6S13_099 | Multiple bulged bases | ||
| IL_6S13_100 | No text annotation | ||
| IL_6S13_101 | Major groove intercalation | ||
| IL_6S13_102 | No text annotation | ||
| IL_6S13_103 | tHS double platform | ||
| IL_6S13_175 | No text annotation | ||
| IL_6S13_104 | Single stack bend | ||
| IL_6S13_105 | No text annotation | ||
| IL_6S13_106 | Major groove intercalation | ||
| IL_6S13_107 | No text annotation | ||
| IL_6S13_108 | Symmetric double minor groove platform | ||
| IL_6S13_109 | Bacterial 5S Loop E | ||
| IL_6S13_176 | No text annotation | ||
| IL_6S13_110 | Tandem non-canonical cWW pairs | ||
| IL_6S13_177 | Isolated non-canonical cWW pair | ||
| IL_6S13_111 | Single bulged G | ||
| IL_6S13_112 | No text annotation | ||
| IL_6S13_113 | No text annotation | ||
| IL_6S13_114 | Multiple bulged bases | ||
| IL_6S13_115 | No text annotation | ||
| IL_6S13_116 | No text annotation | ||
| IL_6S13_117 | No text annotation | ||
| IL_6S13_118 | No text annotation | ||
| IL_6S13_178 | No text annotation | ||
| IL_6S13_119 | Kink-turn with non-sequential stacking | ||
| IL_6S13_120 | No text annotation | ||
| IL_6S13_197 | No text annotation | ||
| IL_6S13_179 | No text annotation | ||
| IL_6S13_121 | No text annotation | ||
| IL_6S13_122 | No text annotation | ||
| IL_6S13_123 | Single bulged U | ||
| IL_6S13_124 | C-loop | ||
| IL_6S13_180 | Major groove platform | ||
| IL_6S13_125 | Single bulged G, near cWW | ||
| IL_6S13_181 | Single stack bend | ||
| IL_6S13_126 | 6x5 Sarcin-Ricin; G-bulge | ||
| IL_6S13_198 | No text annotation | ||
| IL_6S13_182 | No text annotation | ||
| IL_6S13_127 | No text annotation | ||
| IL_6S13_128 | Multiple bulged bases | ||
| IL_6S13_129 | Kink-turn related | ||
| IL_6S13_130 | No text annotation | ||
| IL_6S13_131 | tSH-tHW-tHS | ||
| IL_6S13_183 | Isolated cWH basepair | ||
| IL_6S13_132 | No text annotation | ||
| IL_6S13_199 | No text annotation | ||
| IL_6S13_133 | No text annotation | ||
| IL_6S13_134 | No text annotation | ||
| IL_6S13_200 | No text annotation | ||
| IL_6S13_135 | Major groove platform; stack outside cWW | ||
| IL_6S13_136 | No text annotation | ||
| IL_6S13_184 | No text annotation | ||
| IL_6S13_137 | No text annotation | ||
| IL_6S13_185 | No text annotation | ||
| IL_6S13_138 | No text annotation | ||
| IL_6S13_139 | No text annotation | ||
| IL_6S13_201 | No text annotation | ||
| IL_6S13_186 | No text annotation | ||
| IL_6S13_140 | No text annotation | ||
| IL_6S13_141 | tSH-tHW-tHS | ||
| IL_6S13_142 | No text annotation | ||
| IL_6S13_187 | No text annotation | ||
| IL_6S13_143 | No text annotation | ||
| IL_6S13_144 | No text annotation | ||
| IL_6S13_202 | No text annotation | ||
| IL_6S13_145 | No text annotation | ||
| IL_6S13_146 | No text annotation | ||
| IL_6S13_147 | No text annotation | ||
| IL_6S13_148 | No text annotation | ||
| IL_6S13_149 | No text annotation | ||
| IL_6S13_188 | No text annotation | ||
| IL_6S13_150 | Single stack bend | ||
| IL_6S13_189 | No text annotation | ||
| IL_6S13_151 | No text annotation | ||
| IL_6S13_152 | No text annotation | ||
| IL_6S13_190 | No text annotation | ||
| IL_6S13_153 | No text annotation | ||
| IL_6S13_203 | No text annotation | ||
| IL_6S13_154 | No text annotation | ||
| IL_6S13_155 | No text annotation | ||
| IL_6S13_156 | No text annotation | ||
| IL_6S13_157 | No text annotation | ||
| IL_6S13_158 | No text annotation | ||
| IL_6S13_191 | No text annotation | ||
| IL_6S13_159 | Tandem non-canonical cWW pairs | ||
| IL_6S13_160 | No text annotation | ||
| IL_6S13_161 | Isolated non-canonical cWW pair | ||
| IL_6S13_204 | No text annotation | ||
| IL_6S13_162 | No text annotation | ||
| IL_6S13_192 | No text annotation |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_6S13_001 | No text annotation | ||
| J3_6S13_023 | No text annotation | ||
| J3_6S13_024 | No text annotation | ||
| J3_6S13_002 | No text annotation | ||
| J3_6S13_025 | No text annotation | ||
| J3_6S13_003 | No text annotation | ||
| J3_6S13_004 | No text annotation | ||
| J3_6S13_026 | No text annotation | ||
| J3_6S13_005 | No text annotation | ||
| J3_6S13_006 | No text annotation | ||
| J3_6S13_007 | No text annotation | ||
| J3_6S13_027 | No text annotation | ||
| J3_6S13_028 | No text annotation | ||
| J3_6S13_029 | No text annotation | ||
| J3_6S13_008 | No text annotation | ||
| J3_6S13_030 | No text annotation | ||
| J3_6S13_009 | No text annotation | ||
| J3_6S13_010 | No text annotation | ||
| J3_6S13_011 | No text annotation | ||
| J3_6S13_012 | No text annotation | ||
| J3_6S13_039 | No text annotation | ||
| J3_6S13_013 | No text annotation | ||
| J3_6S13_014 | No text annotation | ||
| J3_6S13_031 | No text annotation | ||
| J3_6S13_015 | No text annotation | ||
| J3_6S13_032 | No text annotation | ||
| J3_6S13_016 | No text annotation | ||
| J3_6S13_017 | No text annotation | ||
| J3_6S13_033 | No text annotation | ||
| J3_6S13_040 | No text annotation | ||
| J3_6S13_018 | No text annotation | ||
| J3_6S13_019 | No text annotation | ||
| J3_6S13_020 | No text annotation | ||
| J3_6S13_034 | No text annotation | ||
| J3_6S13_035 | No text annotation | ||
| J3_6S13_036 | No text annotation | ||
| J3_6S13_041 | No text annotation | ||
| J3_6S13_021 | No text annotation | ||
| J3_6S13_037 | No text annotation | ||
| J3_6S13_038 | No text annotation | ||
| J3_6S13_022 | No text annotation | ||
| J4_6S13_001 | No text annotation | ||
| J4_6S13_002 | No text annotation | ||
| J4_6S13_015 | No text annotation | ||
| J4_6S13_003 | No text annotation | ||
| J4_6S13_004 | No text annotation | ||
| J4_6S13_005 | No text annotation | ||
| J4_6S13_006 | No text annotation | ||
| J4_6S13_007 | No text annotation | ||
| J4_6S13_008 | No text annotation | ||
| J4_6S13_009 | No text annotation | ||
| J4_6S13_010 | No text annotation | ||
| J4_6S13_016 | No text annotation | ||
| J4_6S13_011 | No text annotation | ||
| J4_6S13_017 | No text annotation | ||
| J4_6S13_012 | No text annotation | ||
| J4_6S13_013 | No text annotation | ||
| J4_6S13_014 | No text annotation | ||
| J5_6S13_008 | No text annotation | ||
| J5_6S13_001 | No text annotation | ||
| J5_6S13_002 | No text annotation | ||
| J5_6S13_003 | No text annotation | ||
| J5_6S13_004 | No text annotation | ||
| J5_6S13_009 | No text annotation | ||
| J5_6S13_005 | No text annotation | ||
| J5_6S13_006 | No text annotation | ||
| J5_6S13_007 | No text annotation | ||
| J7_6S13_001 | No text annotation | ||
| J10_6S13_001 | No text annotation | ||
| J10_6S13_002 | No text annotation |
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