HL_6S13_016

3D structure

PDB id

6S13 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.58 Å

Loop

Sequence

CGUUAAUG

Length

8 nucleotides

Bulged bases

6S13|1|A|U|590, 6S13|1|A|U|593

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6S13_016 not in the Motif Atlas

Homologous match to HL_4WF9_017

Geometric discrepancy: 0.3034

The information below is about HL_4WF9_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50318.1

Basepair signature

cWW-cSH-F-F

Number of instances in this motif group

1

Unit IDs

6S13|1|A|C|587
6S13|1|A|G|588
6S13|1|A|U|589
6S13|1|A|U|590
6S13|1|A|A|591
6S13|1|A|A|592
6S13|1|A|U|593
6S13|1|A|G|594

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain H

50S ribosomal protein L13

Chain O

50S ribosomal protein L20

Chain P

50S ribosomal protein L21