HL_6S13_028

3D structure

PDB id

6S13 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.58 Å

Loop

Sequence

GUUGGCUUAGAAGCAGCCAUC

Length

21 nucleotides

Bulged bases

6S13|1|A|A|1114, 6S13|1|A|G|1115, 6S13|1|A|C|1116, 6S13|1|A|A|1117, 6S13|1|A|U|1122

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6S13|1|A|G|1103
6S13|1|A|U|1104
6S13|1|A|U|1105
6S13|1|A|G|1106
6S13|1|A|G|1107
6S13|1|A|C|1108
6S13|1|A|U|1109
6S13|1|A|U|1110
6S13|1|A|A|1111
6S13|1|A|G|1112
6S13|1|A|A|1113
6S13|1|A|A|1114
6S13|1|A|G|1115
6S13|1|A|C|1116
6S13|1|A|A|1117
6S13|1|A|G|1118
6S13|1|A|C|1119
6S13|1|A|C|1120
6S13|1|A|A|1121
6S13|1|A|U|1122
6S13|1|A|C|1123

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 4

50S ribosomal protein L36