HL_6S13_053

3D structure

PDB id

6S13 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.58 Å

Loop

Sequence

GGUUGAAAUC*C

Length

11 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6S13_053 not in the Motif Atlas

Geometric match to HL_361D_002

Geometric discrepancy: 0.3388

The information below is about HL_361D_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

6S13|1|A|G|2330
6S13|1|A|G|2331
6S13|1|A|U|2332
6S13|1|A|U|2333
6S13|1|A|G|2334
6S13|1|A|A|2336
6S13|1|A|A|2337
6S13|1|A|A|2338
6S13|1|A|U|2339
6S13|1|A|C|2340
*
6S13|1|A|C|2340

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain F

50S ribosomal protein L5