HL_6S47_007

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GUGAGAAUC

Length

9 nucleotides

Bulged bases

6S47|1|AA|G|218, 6S47|1|AA|A|219, 6S47|1|AA|G|220

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6S47_007 not in the Motif Atlas

Homologous match to HL_8C3A_007

Geometric discrepancy: 0.0561

The information below is about HL_8C3A_007

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_08002.12

Basepair signature

cWW-cWW-F-tWH

Number of instances in this motif group

16

Unit IDs

6S47|1|AA|G|216
6S47|1|AA|U|217
6S47|1|AA|G|218
6S47|1|AA|A|219
6S47|1|AA|G|220
6S47|1|AA|A|221
6S47|1|AA|A|222
6S47|1|AA|U|223
6S47|1|AA|C|224

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AC

5.8S ribosomal RNA; 5.8S rRNA

Chain AF

60S ribosomal protein L4-A

Chain Aa

60S ribosomal protein L26-A