HL_6S47_014

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

UCUUGAAACA

Length

10 nucleotides

Bulged bases

6S47|1|AA|C|648

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6S47_014 not in the Motif Atlas

Homologous match to HL_8C3A_014

Geometric discrepancy: 0.0684

The information below is about HL_8C3A_014

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

6S47|1|AA|U|640
6S47|1|AA|C|641
6S47|1|AA|U|642
6S47|1|AA|U|643
6S47|1|AA|G|644
6S47|1|AA|A|645
6S47|1|AA|A|646
6S47|1|AA|A|647
6S47|1|AA|C|648
6S47|1|AA|A|649

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AE

60S ribosomal protein L3

Chain Ac

60S ribosomal protein L28

Chain Ag

60S ribosomal protein L32