HL_6S47_019

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6S47_019 not in the Motif Atlas

Homologous match to HL_8C3A_019

Geometric discrepancy: 0.218

The information below is about HL_8C3A_019

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6S47|1|AA|G|844
6S47|1|AA|G|845
6S47|1|AA|A|846
6S47|1|AA|A|847
6S47|1|AA|A|848
6S47|1|AA|C|849

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain Ar

60S ribosomal protein L43-A

Chain BA

Small subunit ribosomal RNA; SSU rRNA

Chain BM

40S ribosomal protein S11-A

Chain BO

40S ribosomal protein S13