HL_6S47_021

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

6S47|1|AA|A|913, 6S47|1|AA|G|916

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6S47_021 not in the Motif Atlas

Homologous match to HL_5TBW_021

Geometric discrepancy: 0.0673

The information below is about HL_5TBW_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6S47|1|AA|G|910
6S47|1|AA|C|911
6S47|1|AA|G|912
6S47|1|AA|A|913
6S47|1|AA|A|914
6S47|1|AA|A|915
6S47|1|AA|G|916
6S47|1|AA|A|917
6S47|1|AA|C|918

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AD

60S ribosomal protein L2-A

Chain AP

60S ribosomal protein L15-A

Chain Al

60S ribosomal protein L37-A