HL_6S47_022

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CCUCAG

Length

6 nucleotides

Bulged bases

6S47|1|AA|C|959, 6S47|1|AA|A|962

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6S47_022 not in the Motif Atlas

Homologous match to HL_8C3A_022

Geometric discrepancy: 0.0802

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

6S47|1|AA|C|958
6S47|1|AA|C|959
6S47|1|AA|U|960
6S47|1|AA|C|961
6S47|1|AA|A|962
6S47|1|AA|G|963

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain Ac

60S ribosomal protein L28

Chain Ad

60S ribosomal protein L29

Chain Aq

60S ribosomal protein L42-A