HL_6S47_026
3D structure
- PDB id
- 6S47 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.28 Å
Loop
- Sequence
- GGAUGAAC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6S47_026 not in the Motif Atlas
- Homologous match to HL_8C3A_026
- Geometric discrepancy: 0.0667
- The information below is about HL_8C3A_026
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_44398.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
6S47|1|AA|G|1148
6S47|1|AA|G|1149
6S47|1|AA|A|1150
6S47|1|AA|U|1151
6S47|1|AA|G|1152
6S47|1|AA|A|1153
6S47|1|AA|A|1154
6S47|1|AA|C|1155
Current chains
- Chain AA
- 28S ribosomal RNA
Nearby chains
- Chain AB
- 5S ribosomal RNA; 5S rRNA
- Chain AI
- 60S ribosomal protein L7-A
- Chain Ag
- 60S ribosomal protein L32
- Chain Ah
- 60S ribosomal protein L33-A
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