HL_6S47_029
3D structure
- PDB id
- 6S47 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.28 Å
Loop
- Sequence
- UUGAUAUGAUG
- Length
- 11 nucleotides
- Bulged bases
- 6S47|1|AA|G|1354, 6S47|1|AA|U|1356
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6S47_029 not in the Motif Atlas
- Homologous match to HL_5TBW_029
- Geometric discrepancy: 0.2435
- The information below is about HL_5TBW_029
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_01763.1
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
6S47|1|AA|U|1347
6S47|1|AA|U|1348
6S47|1|AA|G|1349
6S47|1|AA|A|1350
6S47|1|AA|U|1351
6S47|1|AA|A|1352
6S47|1|AA|U|1353
6S47|1|AA|G|1354
6S47|1|AA|A|1355
6S47|1|AA|U|1356
6S47|1|AA|G|1357
Current chains
- Chain AA
- 28S ribosomal RNA
Nearby chains
- Chain AF
- 60S ribosomal protein L4-A
- Chain AH
- 60S ribosomal protein L6-A
- Chain AS
- 60S ribosomal protein L18-A
- Chain Ag
- 60S ribosomal protein L32
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