HL_6S47_032

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

AGCAGUU

Length

7 nucleotides

Bulged bases

6S47|1|AA|G|1507, 6S47|1|AA|U|1511

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6S47_032 not in the Motif Atlas

Homologous match to HL_8C3A_032

Geometric discrepancy: 0.0792

The information below is about HL_8C3A_032

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_40756.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

6S47|1|AA|A|1506
6S47|1|AA|G|1507
6S47|1|AA|C|1508
6S47|1|AA|A|1509
6S47|1|AA|G|1510
6S47|1|AA|U|1511
6S47|1|AA|U|1512

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AR

60S ribosomal protein L17-A

Chain AT

60S ribosomal protein L19-A

Chain An

60S ribosomal protein L39