HL_6S47_043

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

6S47|1|AA|U|1925

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6S47_043 not in the Motif Atlas

Homologous match to HL_8C3A_043

Geometric discrepancy: 0.0678

The information below is about HL_8C3A_043

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

6S47|1|AA|C|1923
6S47|1|AA|U|1924
6S47|1|AA|U|1925
6S47|1|AA|C|1926
6S47|1|AA|G|1927
6S47|1|AA|G|1928

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain Ap

60S ribosomal protein L41-B

Chain Ar

60S ribosomal protein L43-A

Chain BA

Small subunit ribosomal RNA; SSU rRNA