HL_6S47_052

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

AGACAUAGUUU

Length

11 nucleotides

Bulged bases

6S47|1|AA|U|2501

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6S47_052 not in the Motif Atlas

Homologous match to HL_5TBW_052

Geometric discrepancy: 0.3159

The information below is about HL_5TBW_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_59851.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

6S47|1|AA|A|2441
6S47|1|AA|G|2442
6S47|1|AA|A|2443
6S47|1|AA|C|2444
6S47|1|AA|A|2445
6S47|1|AA|U|2501
6S47|1|AA|A|2502
6S47|1|AA|G|2503
6S47|1|AA|U|2504
6S47|1|AA|U|2505
6S47|1|AA|U|2506

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain Ak

60S ribosomal protein L36-A

Chain BC

40S ribosomal protein S1-A