HL_6S47_056

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

UUAAACGAUAACG

Length

13 nucleotides

Bulged bases

6S47|1|AA|A|2637, 6S47|1|AA|C|2644

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6S47_056 not in the Motif Atlas

Homologous match to HL_5TBW_055

Geometric discrepancy: 0.0755

The information below is about HL_5TBW_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.9

Basepair signature

cWW-tHH-cWW-tHS-F-F-tWW

Number of instances in this motif group

8

Unit IDs

6S47|1|AA|U|2633
6S47|1|AA|U|2634
6S47|1|AA|A|2635
6S47|1|AA|A|2636
6S47|1|AA|A|2637
6S47|1|AA|C|2638
6S47|1|AA|G|2639
6S47|1|AA|A|2640
6S47|1|AA|U|2641
6S47|1|AA|A|2642
6S47|1|AA|A|2643
6S47|1|AA|C|2644
6S47|1|AA|G|2645

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AL

60S ribosomal protein L10

Chain AV

60S ribosomal protein L21-A

Chain Ad

60S ribosomal protein L29