HL_6S47_062

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CGUUCAUAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6S47_062 not in the Motif Atlas

Homologous match to HL_5TBW_061

Geometric discrepancy: 0.1085

The information below is about HL_5TBW_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82661.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6S47|1|AA|C|2840
6S47|1|AA|G|2841
6S47|1|AA|U|2842
6S47|1|AA|U|2843
6S47|1|AA|C|2844
6S47|1|AA|A|2845
6S47|1|AA|U|2846
6S47|1|AA|A|2847
6S47|1|AA|G|2848

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AL

60S ribosomal protein L10

Chain Ao

Ubiquitin-60S ribosomal protein L40