HL_6S47_063

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

6S47|1|AA|G|2898

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6S47_063 not in the Motif Atlas

Homologous match to HL_5TBW_062

Geometric discrepancy: 0.0911

The information below is about HL_5TBW_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79150.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

6S47|1|AA|A|2897
6S47|1|AA|G|2898
6S47|1|AA|C|2899
6S47|1|AA|A|2900
6S47|1|AA|G|2901
6S47|1|AA|A|2902
6S47|1|AA|A|2903
6S47|1|AA|U|2904

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AK

60S ribosomal protein L9-A

Chain Ao

Ubiquitin-60S ribosomal protein L40