HL_6S47_070

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CGGAAAGG

Length

8 nucleotides

Bulged bases

6S47|1|AA|A|3243, 6S47|1|AA|A|3244

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6S47_070 not in the Motif Atlas

Homologous match to HL_5TBW_069

Geometric discrepancy: 0.079

The information below is about HL_5TBW_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_24596.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

7

Unit IDs

6S47|1|AA|C|3240
6S47|1|AA|G|3241
6S47|1|AA|G|3242
6S47|1|AA|A|3243
6S47|1|AA|A|3244
6S47|1|AA|A|3245
6S47|1|AA|G|3246
6S47|1|AA|G|3247

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AE

60S ribosomal protein L3

Chain AQ

60S ribosomal protein L16-A