HL_6S47_080

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GUAAUUC

Length

7 nucleotides

Bulged bases

6S47|1|BA|U|158, 6S47|1|BA|U|159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6S47_080 not in the Motif Atlas

Homologous match to HL_4V88_188

Geometric discrepancy: 0.1207

The information below is about HL_4V88_188

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6S47|1|BA|G|154
6S47|1|BA|U|155
6S47|1|BA|A|156
6S47|1|BA|A|157
6S47|1|BA|U|158
6S47|1|BA|U|159
6S47|1|BA|C|160

Current chains

Chain BA

18S rRNA (1707-MER)

Nearby chains

Chain BH

40S ribosomal protein S6-A

Chain BZ

40S ribosomal protein S24-A