HL_6S47_081

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CCUUUG

Length

6 nucleotides

Bulged bases

6S47|1|BA|U|194

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6S47_081 not in the Motif Atlas

Geometric match to HL_5TBW_044

Geometric discrepancy: 0.3581

The information below is about HL_5TBW_044

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81100.1

Basepair signature

cWW

Number of instances in this motif group

4

Unit IDs

6S47|1|BA|C|190
6S47|1|BA|C|191
6S47|1|BA|U|192
6S47|1|BA|U|193
6S47|1|BA|U|194
6S47|1|BA|G|195

Current chains

Chain BA

18S rRNA (1707-MER)

Nearby chains

Chain BJ

40S ribosomal protein S8-A