HL_6S47_090

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CAUUCG

Length

6 nucleotides

Bulged bases

6S47|1|BA|C|495

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6S47_090 not in the Motif Atlas

Homologous match to HL_4V88_198

Geometric discrepancy: 0.5602

The information below is about HL_4V88_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

6S47|1|BA|C|491
6S47|1|BA|A|492
6S47|1|BA|U|493
6S47|1|BA|U|494
6S47|1|BA|C|495
6S47|1|BA|G|496

Current chains

Chain BA

18S rRNA (1707-MER)

Nearby chains