HL_6S47_096

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

AGGUGAAAUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6S47_096 not in the Motif Atlas

Homologous match to HL_4V88_206

Geometric discrepancy: 0.0992

The information below is about HL_4V88_206

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

6S47|1|BA|A|900
6S47|1|BA|G|901
6S47|1|BA|G|902
6S47|1|BA|U|903
6S47|1|BA|G|904
6S47|1|BA|A|905
6S47|1|BA|A|906
6S47|1|BA|A|907
6S47|1|BA|U|908
6S47|1|BA|U|909

Current chains

Chain BA

18S rRNA (1707-MER)

Nearby chains

Chain BG

Rps5p

Chain BP

40S ribosomal protein S14-A

Chain Bb

40S ribosomal protein S26-B