HL_6S47_098
3D structure
- PDB id
- 6S47 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.28 Å
Loop
- Sequence
- GAUCAGAUACC
- Length
- 11 nucleotides
- Bulged bases
- 6S47|1|BA|U|1004
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6S47_098 not in the Motif Atlas
- Homologous match to HL_4V88_208
- Geometric discrepancy: 0.1106
- The information below is about HL_4V88_208
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 14
Unit IDs
6S47|1|BA|G|997
6S47|1|BA|A|998
6S47|1|BA|U|999
6S47|1|BA|C|1000
6S47|1|BA|A|1001
6S47|1|BA|G|1002
6S47|1|BA|A|1003
6S47|1|BA|U|1004
6S47|1|BA|A|1005
6S47|1|BA|C|1006
6S47|1|BA|C|1007
Current chains
- Chain BA
- 18S rRNA (1707-MER)
Nearby chains
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain BP
- 40S ribosomal protein S14-A
- Chain Bb
- 40S ribosomal protein S26-B
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