HL_6S47_104

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GAGUGAUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6S47_104 not in the Motif Atlas

Geometric match to HL_7A0S_056

Geometric discrepancy: 0.2898

The information below is about HL_7A0S_056

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_04259.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6S47|1|BA|G|1295
6S47|1|BA|A|1296
6S47|1|BA|G|1297
6S47|1|BA|U|1298
6S47|1|BA|G|1299
6S47|1|BA|A|1300
6S47|1|BA|U|1301
6S47|1|BA|U|1302

Current chains

Chain BA

18S rRNA (1707-MER)

Nearby chains

Chain BB

40S ribosomal protein S0-A

Chain BD

40S ribosomal protein S2