HL_6SDW_011

3D structure

PDB id

6SDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Solution structure of Staufen1 dsRBD3+4 - hARF1 SBS dsRNA complex.

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

6SDW|11|B|U|17

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SDW_011 not in the Motif Atlas

Geometric match to HL_6CK5_001

Geometric discrepancy: 0.2602

The information below is about HL_6CK5_001

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

72

Unit IDs

6SDW|11|B|C|15
6SDW|11|B|U|16
6SDW|11|B|U|17
6SDW|11|B|C|18
6SDW|11|B|G|19
6SDW|11|B|G|20

Current chains

Chain B

hARF1 SBS dsRNA

Nearby chains

Chain A

Double-stranded RNA-binding protein Staufen homolog 1