HL_6SGC_002
3D structure
- PDB id
- 6SGC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled on a poly(A) tail
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GACU(70U)UU(12A)A(PSU)C
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 70U, 12A, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6SGC_002 not in the Motif Atlas
- Homologous match to HL_1FIR_002
- Geometric discrepancy: 0.1617
- The information below is about HL_1FIR_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6SGC|1|23|G|30
6SGC|1|23|A|31
6SGC|1|23|C|32
6SGC|1|23|U|33
6SGC|1|23|70U|34
6SGC|1|23|U|35
6SGC|1|23|U|36
6SGC|1|23|12A|37
6SGC|1|23|A|38
6SGC|1|23|PSU|39
6SGC|1|23|C|40
Current chains
- Chain 23
- tRNA (Lys3)
Nearby chains
- Chain A1
- Small subunit ribosomal RNA; SSU rRNA
- Chain Q1
- uS19
- Chain R1
- Ribosomal protein S16
- Chain i1
- polyA mRNA
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