6SGC Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6SGC_001 | 1/23/13:22 | No text annotation | homologous HL_6PMO_003 NA | |
| HL_6SGC_122 | 1/23/31:39 | tRNA anticodon loop | homologous HL_1FIR_005 HL_06059.7 | |
| HL_6SGC_003 | 1/23/53:61 | T-loop with 2 stacked bulged bases | homologous HL_6CFJ_108 HL_28252.9 | |
| HL_6SGC_004 | 1/33/13:22 | No text annotation | homologous HL_6PMO_003 NA | |
| HL_6SGC_123 | 1/33/31:39 | tRNA anticodon loop | homologous HL_1FIR_005 HL_06059.7 | |
| HL_6SGC_006 | 1/33/53:61 | T-loop with 2 stacked bulged bases | homologous HL_6CFJ_108 HL_28252.9 | |
| HL_6SGC_007 | 1/54/37:44 | No text annotation | homologous HL_5TBW_001 NA | |
| HL_6SGC_008 | 1/54/68:73 | No text annotation | homologous HL_8C3A_002 NA | |
| HL_6SGC_009 | 1/54/89:95 | No text annotation | homologous HL_8C3A_003 NA | |
| HL_6SGC_010 | 1/54/131:137 | No text annotation | geometric HL_4WF9_003 HL_75660.5 | |
| HL_6SGC_011 | 1/54/204:211 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_005 NA | |
| HL_6SGC_012 | 1/54/222:226 | No text annotation | homologous HL_5TBW_006 NA | |
| HL_6SGC_013 | 1/54/230:238 | T-loop with unstacked turn | homologous HL_5TBW_007 NA | |
| HL_6SGC_014 | 1/54/289:298 | No text annotation | homologous HL_5TBW_008 NA | |
| HL_6SGC_015 | 1/54/314:323 | Pseudoknot geometry | homologous HL_8C3A_009 NA | |
| HL_6SGC_016 | 1/54/368:373 | GNRA | homologous HL_8C3A_010 NA | |
| HL_6SGC_017 | 1/54/393:398 | GNRA | homologous HL_5TBW_011 NA | |
| HL_6SGC_018 | 1/54/759:904 | No text annotation | geometric HL_5ID6_001 HL_69752.2 | |
| HL_6SGC_019 | 1/54/962:970 | No text annotation | geometric HL_2Y9H_003 HL_75660.5 | |
| HL_6SGC_020 | 1/54/1177:1184 | No text annotation | geometric HL_5NFV_001 HL_69752.2 | |
| HL_6SGC_021 | 1/54/1317:1326 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_014 NA | |
| HL_6SGC_124 | 1/54/1364:1373 | No text annotation | ||
| HL_6SGC_023 | 1/54/1389:1394 | GNRA | homologous HL_8C3A_016 NA | |
| HL_6SGC_024 | 1/54/1436:1448 | Pseudoknot geometry | geometric HL_1ZCI_002 HL_94376.1 | |
| HL_6SGC_025 | 1/54/1479:1486 | Other HL | geometric HL_5J7L_200 HL_08100.1 | |
| HL_6SGC_026 | 1/54/1561:1566 | GNRA | homologous HL_5TBW_019 NA | |
| HL_6SGC_027 | 1/54/1593:1602 | No text annotation | homologous HL_5TBW_020 NA | |
| HL_6SGC_028 | 1/54/1627:1635 | No text annotation | homologous HL_5TBW_021 NA | |
| HL_6SGC_029 | 1/54/1675:1680 | Externally structured | homologous HL_8C3A_022 NA | |
| HL_6SGC_030 | 1/54/1761:1771 | No text annotation | ||
| HL_6SGC_031 | 1/54/1816:1823 | T-loop related | geometric HL_3R4F_001 HL_77436.5 | |
| HL_6SGC_032 | 1/54/1864:1870 | GNRA | homologous HL_8C3A_025 NA | |
| HL_6SGC_033 | 1/54/1886:1893 | No text annotation | homologous HL_5TBW_026 NA | |
| HL_6SGC_034 | 1/54/1973:1993 | No text annotation | ||
| HL_6SGC_035 | 1/54/2006:2013 | GNRA wlth tandem sheared | geometric HL_6PRV_002 HL_81538.2 | |
| HL_6SGC_036 | 1/54/2087:2270 | No text annotation | ||
| HL_6SGC_037 | 1/54/2317:2322 | GNRA | homologous HL_8C3A_030 NA | |
| HL_6SGC_038 | 1/54/2376:2384 | T-loop with 2 stacked bulged bases | homologous HL_5TBW_031 NA | |
| HL_6SGC_039 | 1/54/2420:2426 | Pseudoknot geometry with 3' bulge | homologous HL_5TBW_032 NA | |
| HL_6SGC_040 | 1/54/2458:2463 | GNRA variation | homologous HL_5TBW_033 NA | |
| HL_6SGC_041 | 1/54/2487:2491 | No text annotation | ||
| HL_6SGC_042 | 1/54/2523:2532 | No text annotation | homologous HL_5TBW_035 NA | |
| HL_6SGC_043 | 1/54/2561:2566 | GNRA | geometric HL_5J7L_152 HL_37824.8 | |
| HL_6SGC_044 | 1/54/2578:2583 | GNRA | homologous HL_5TBW_036 NA | |
| HL_6SGC_045 | 1/54/2624:2632 | No text annotation | homologous HL_8C3A_037 NA | |
| HL_6SGC_046 | 1/54/2664:2670 | Other HL | geometric HL_4V9F_039 HL_77436.5 | |
| HL_6SGC_047 | 1/54/2705:2710 | No text annotation | geometric HL_4V9F_003 HL_75660.5 | |
| HL_6SGC_048 | 1/54/2738:2742 | No text annotation | homologous HL_8C3A_040 NA | |
| HL_6SGC_049 | 1/54/2792:2799 | No text annotation | homologous HL_5TBW_041 NA | |
| HL_6SGC_050 | 1/54/2810:2816 | GNRA | homologous HL_5TBW_042 NA | |
| HL_6SGC_051 | 1/54/2872:2877 | UNCG | homologous HL_8C3A_043 NA | |
| HL_6SGC_052 | 1/54/2901:3598 | No text annotation | ||
| HL_6SGC_053 | 1/54/3614:3618 | No text annotation | homologous HL_8C3A_045 NA | |
| HL_6SGC_054 | 1/54/3639:3649 | No text annotation | homologous HL_5TBW_046 NA | |
| HL_6SGC_055 | 1/54/3668:3674 | GNRA | homologous HL_8C3A_047 NA | |
| HL_6SGC_056 | 1/54/3724:3729 | GNRA | homologous HL_5TBW_048 NA | |
| HL_6SGC_057 | 1/54/3757:3767 | No text annotation | homologous HL_5TBW_049 NA | |
| HL_6SGC_058 | 1/54/3796:3804 | No text annotation | homologous HL_8C3A_050 NA | |
| HL_6SGC_059 | 1/54/3873:3882 | No text annotation | homologous HL_5TBW_051 NA | |
| HL_6SGC_060 | 1/54/3976:4035 | No text annotation | geometric HL_8KAL_003 HL_75660.5 | |
| HL_6SGC_061 | 1/54/4095:4113 | No text annotation | ||
| HL_6SGC_062 | 1/54/4137:4147 | Externally structured | geometric HL_5TBW_022 NA | |
| HL_6SGC_063 | 1/54/4193:4201 | No text annotation | homologous HL_8C3A_055 NA | |
| HL_6SGC_064 | 1/54/4210:4222 | No text annotation | homologous HL_8C3A_056 NA | |
| HL_6SGC_065 | 1/54/4250:4258 | No text annotation | homologous HL_8C3A_057 NA | |
| HL_6SGC_066 | 1/54/4270:4277 | Pseudoknot geometry | homologous HL_5TBW_057 NA | |
| HL_6SGC_067 | 1/54/4301:4309 | No text annotation | homologous HL_8C3A_059 NA | |
| HL_6SGC_068 | 1/54/4321:4326 | GNRA | homologous HL_5TBW_059 NA | |
| HL_6SGC_069 | 1/54/4352:4362 | No text annotation | geometric HL_2ZZM_002 HL_13963.3 | |
| HL_6SGC_070 | 1/54/4417:4425 | No text annotation | homologous HL_5TBW_061 NA | |
| HL_6SGC_071 | 1/54/4474:4481 | No text annotation | homologous HL_5TBW_062 NA | |
| HL_6SGC_072 | 1/54/4497:4503 | No text annotation | geometric HL_5TBW_063 NA | |
| HL_6SGC_073 | 1/54/4540:4545 | GNRA | homologous HL_5TBW_064 NA | |
| HL_6SGC_074 | 1/54/4603:4608 | GNRA | homologous HL_5TBW_065 NA | |
| HL_6SGC_075 | 1/54/4646:4651 | Ribsomal LSU H95 | homologous HL_8C3A_067 NA | |
| HL_6SGC_076 | 1/54/4688:4702 | No text annotation | homologous HL_8C3A_068 NA | |
| HL_6SGC_125 | 1/54/4776:4859 | No text annotation | geometric HL_8KAL_003 HL_75660.5 | |
| HL_6SGC_078 | 1/54/4906:4915 | No text annotation | geometric HL_2Y9H_003 HL_75660.5 | |
| HL_6SGC_079 | 1/54/4975:4983 | No text annotation | geometric HL_5J7L_201 HL_64690.6 | |
| HL_6SGC_080 | 1/54/5021:5028 | Mini UNCG | homologous HL_8C3A_072 NA | |
| HL_6SGC_126 | 1/74/32:45 | No text annotation | homologous HL_8C3A_228 NA | |
| HL_6SGC_081 | 1/74/36:41 | No text annotation | geometric HL_5TBW_185 NA | |
| HL_6SGC_082 | 1/74/86:91 | GNRA | homologous HL_5TBW_186 NA | |
| HL_6SGC_083 | 1/84/47:56 | No text annotation | geometric HL_7RQB_001 NA | |
| HL_6SGC_085 | 1/84/107:112 | No text annotation | homologous HL_5TBW_075 NA | |
| HL_6SGC_086 | 1/84/121:129 | No text annotation | ||
| HL_6SGC_087 | 1/A1/7:17 | No text annotation | homologous HL_4V88_186 NA | |
| HL_6SGC_088 | 1/A1/69:80 | No text annotation | geometric HL_3SKL_006 NA | |
| HL_6SGC_089 | 1/A1/156:162 | GNRA related | homologous HL_4V88_188 NA | |
| HL_6SGC_127 | 1/A1/197:202 | GNRA | geometric HL_5J7L_007 HL_37824.8 | |
| HL_6SGC_091 | 1/A1/288:295 | T-loop with 1 bulged base | homologous HL_4V88_191 NA | |
| HL_6SGC_093 | 1/A1/377:387 | No text annotation | ||
| HL_6SGC_094 | 1/A1/416:421 | No text annotation | homologous HL_4V88_194 NA | |
| HL_6SGC_095 | 1/A1/441:452 | No text annotation | homologous HL_4V88_195 NA | |
| HL_6SGC_096 | 1/A1/462:467 | UNCG | homologous HL_4V88_196 NA | |
| HL_6SGC_097 | 1/A1/498:504 | No text annotation | homologous HL_4V88_197 NA | |
| HL_6SGC_098 | 1/A1/539:544 | GNRA | geometric HL_5J7L_190 HL_37824.8 | |
| HL_6SGC_099 | 1/A1/569:581 | No text annotation | homologous HL_4V88_199 NA | |
| HL_6SGC_100 | 1/A1/618:623 | GNRA variation | homologous HL_4V88_200 NA | |
| HL_6SGC_102 | 1/A1/820:828 | No text annotation | homologous HL_4V88_203 NA | |
| HL_6SGC_128 | 1/A1/885:901 | No text annotation | ||
| HL_6SGC_105 | 1/A1/957:966 | No text annotation | homologous HL_4V88_206 NA | |
| HL_6SGC_106 | 1/A1/994:999 | GNRA | homologous HL_4V88_207 NA | |
| HL_6SGC_107 | 1/A1/1054:1064 | No text annotation | homologous HL_4V88_208 NA | |
| HL_6SGC_108 | 1/A1/1114:1119 | No text annotation | geometric HL_5TBW_044 NA | |
| HL_6SGC_109 | 1/A1/1141:1146 | GNRA | homologous HL_4V88_210 NA | |
| HL_6SGC_110 | 1/A1/1178:1183 | GNRA | homologous HL_4V88_211 NA | |
| HL_6SGC_111 | 1/A1/1245:1254 | No text annotation | homologous HL_4V88_212 NA | |
| HL_6SGC_112 | 1/A1/1295:1304 | Anticodon loop related | homologous HL_4V88_213 NA | |
| HL_6SGC_113 | 1/A1/1353:1358 | GNRA | homologous HL_4V88_214 NA | |
| HL_6SGC_114 | 1/A1/1366:1373 | No text annotation | homologous HL_4V88_215 NA | |
| HL_6SGC_116 | 1/A1/1460:1466 | GNRA | homologous HL_4V88_217 NA | |
| HL_6SGC_117 | 1/A1/1565:1570 | GNRA | homologous HL_4V88_218 NA | |
| HL_6SGC_118 | 1/A1/1614:1625 | No text annotation | homologous HL_4V88_219 NA | |
| HL_6SGC_119 | 1/A1/1658:1666 | No text annotation | homologous HL_4V88_220 NA | |
| HL_6SGC_121 | 1/A1/1847:1852 | GNRA variation | homologous HL_4V88_222 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6SGC_002 | No text annotation | ||
| HL_6SGC_005 | No text annotation | ||
| HL_6SGC_022 | No text annotation | ||
| HL_6SGC_077 | No text annotation | ||
| HL_6SGC_084 | No text annotation | ||
| HL_6SGC_090 | GNRA wlth tandem sheared | ||
| HL_6SGC_092 | Externally structured | ||
| HL_6SGC_101 | No text annotation | ||
| HL_6SGC_103 | No text annotation | ||
| HL_6SGC_104 | No text annotation | ||
| HL_6SGC_115 | No text annotation | ||
| HL_6SGC_120 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6SGC_001 | 1/23/5:7, 1/23/66:68 | No text annotation | homologous IL_4WSM_380 NA | |
| IL_6SGC_002 | 1/33/5:7, 1/33/66:68 | No text annotation | homologous IL_4WSM_380 NA | |
| IL_6SGC_003 | 1/54/6:7, 1/84/149:151 | Single bulged C | homologous IL_8C3A_002 NA | |
| IL_6SGC_004 | 1/54/12:14, 1/84/143:144 | Single bulged U | homologous IL_8C3A_003 NA | |
| IL_6SGC_005 | 1/54/16:18, 1/84/139:141 | Isolated non-canonical cWW pair | geometric IL_1Y27_001 IL_87907.2 | |
| IL_6SGC_006 | 1/54/26:27, 1/54/55:57 | Single stack bend | homologous IL_5TBW_004 NA | |
| IL_6SGC_007 | 1/54/30:37, 1/54/44:52 | 9x8 Sarcin-Ricin; G-bulge | geometric IL_4WF9_008 IL_84694.2 | |
| IL_6SGC_008 | 1/54/81:88, 1/54/96:102 | No text annotation | homologous IL_8C3A_006 NA | |
| IL_6SGC_009 | 1/54/118:121, 1/54/152:153 | Major groove intercalation | geometric IL_1U9S_003 IL_82107.5 | |
| IL_6SGC_262 | 1/54/118:122, 1/54/147:153 | No text annotation | ||
| IL_6SGC_010 | 1/54/121:122, 1/54/147:152 | No text annotation | homologous IL_5TBW_007 NA | |
| IL_6SGC_011 | 1/54/125:126, 1/54/142:144 | Single bulged C | geometric IL_1DQF_001 IL_61258.15 | |
| IL_6SGC_012 | 1/54/168:173, 1/54/263:267 | No text annotation | ||
| IL_6SGC_013 | 1/54/180:189, 1/54/252:256 | No text annotation | ||
| IL_6SGC_014 | 1/54/195:196, 1/54/244:246 | Single bulged C | geometric IL_1DQF_001 IL_61258.15 | |
| IL_6SGC_015 | 1/54/199:201, 1/54/214:215 | Single bulged U | homologous IL_8C3A_013 NA | |
| IL_6SGC_016 | 1/54/339:342, 1/84/32:33 | Minor groove platform | geometric IL_7RQB_073 NA | |
| IL_6SGC_017 | 1/54/348:350, 1/84/25:26 | Single bulged A | homologous IL_8C3A_014 NA | |
| IL_6SGC_018 | 1/54/387:390, 1/54/401:414 | No text annotation | homologous IL_5TBW_014 NA | |
| IL_6SGC_019 | 1/54/415:421, 1/84/13:19 | Triple sheared with non-canonical cWW | homologous IL_5TBW_015 NA | |
| IL_6SGC_020 | 1/54/443:446, 1/54/1300:1304 | No text annotation | geometric IL_4PHY_003 IL_99358.1 | |
| IL_6SGC_021 | 1/54/448:450, 1/54/1297:1298 | No text annotation | ||
| IL_6SGC_022 | 1/54/459:460, 1/54/695:697 | Single bulged C | geometric IL_1DQF_001 IL_61258.15 | |
| IL_6SGC_023 | 1/54/462:464, 1/54/691:693 | Isolated non-canonical cWW pair | geometric IL_3DIL_006 IL_87907.2 | |
| IL_6SGC_024 | 1/54/466:472, 1/54/682:689 | No text annotation | ||
| IL_6SGC_025 | 1/54/481:482, 1/54/672:673 | Single bulged C | geometric IL_3HHN_003 IL_61258.15 | |
| IL_6SGC_026 | 1/54/482:485, 1/54/671:672 | Multiple bulged bases | geometric IL_6JXM_001 IL_84476.1 | |
| IL_6SGC_027 | 1/54/487:488, 1/54/665:669 | Major groove intercalation | geometric IL_1U9S_003 IL_82107.5 | |
| IL_6SGC_028 | 1/54/491:493, 1/54/661:662 | No text annotation | ||
| IL_6SGC_029 | 1/54/497:499, 1/54/656:657 | No text annotation | ||
| IL_6SGC_030 | 1/54/508:510, 1/54/649:650 | Single bulged A | geometric IL_6WPI_001 IL_31462.7 | |
| IL_6SGC_031 | 1/54/520:523, 1/54/638:641 | Tandem non-canonical cWW pairs | geometric IL_7KJT_003 NA | |
| IL_6SGC_032 | 1/54/709:710, 1/54/1286:1288 | Single bulged G | geometric IL_4LFB_036 IL_00225.14 | |
| IL_6SGC_033 | 1/54/723:724, 1/54/942:945 | Multiple bulged bases | geometric IL_7V9E_001 NA | |
| IL_6SGC_034 | 1/54/727:731, 1/54/938:939 | No text annotation | ||
| IL_6SGC_035 | 1/54/732:735, 1/54/928:937 | No text annotation | ||
| IL_6SGC_036 | 1/54/737:739, 1/54/923:926 | No text annotation | geometric IL_5J7L_341 IL_42626.2 | |
| IL_6SGC_037 | 1/54/745:752, 1/54/911:919 | No text annotation | geometric IL_5TBW_020 NA | |
| IL_6SGC_038 | 1/54/980:982, 1/54/1273:1275 | No text annotation | geometric IL_2ZNI_001 NA | |
| IL_6SGC_039 | 1/54/1074:1076, 1/54/1234:1236 | Isolated non-canonical cWW pair | geometric IL_3D0U_006 IL_87907.2 | |
| IL_6SGC_040 | 1/54/1077:1080, 1/54/1219:1233 | No text annotation | ||
| IL_6SGC_041 | 1/54/1082:1084, 1/54/1213:1217 | Isolated near basepair | geometric IL_7A0S_030 IL_42997.3 | |
| IL_6SGC_042 | 1/54/1086:1087, 1/54/1209:1211 | Single bulged C | geometric IL_3W3S_001 IL_61258.15 | |
| IL_6SGC_043 | 1/54/1097:1098, 1/54/1197:1199 | Single stack bend | geometric IL_7KGA_003 IL_90729.1 | |
| IL_6SGC_277 | 1/54/1100:1168, 1/54/1193:1195 | Single stack bend | geometric IL_8P9A_238 IL_90729.1 | |
| IL_6SGC_045 | 1/54/1173:1175, 1/54/1186:1188 | Isolated cWH basepair | geometric IL_3W3S_003 IL_10167.6 | |
| IL_6SGC_046 | 1/54/1357:1360, 1/54/1379:1382 | No text annotation | ||
| IL_6SGC_264 | 1/54/1357:1361, 1/54/1376:1382 | No text annotation | ||
| IL_6SGC_047 | 1/54/1360:1361, 1/54/1376:1379 | Major groove intercalation | geometric IL_1NBS_009 IL_82107.5 | |
| IL_6SGC_048 | 1/54/1425:1429, 1/54/1455:1460 | Triple sheared related | geometric IL_4V9F_018 IL_97631.1 | |
| IL_6SGC_049 | 1/54/1431:1434, 1/54/1450:1453 | Double sheared | geometric IL_4KZD_002 IL_09705.15 | |
| IL_6SGC_050 | 1/54/1467:1468, 1/54/1496:1498 | Single bulged A | homologous IL_8C3A_026 NA | |
| IL_6SGC_051 | 1/54/1474:1476, 1/54/1489:1490 | Single stack bend | geometric IL_7A0S_005 IL_90729.1 | |
| IL_6SGC_052 | 1/54/1520:1522, 1/54/1655:1657 | Isolated non-canonical cWW pair | geometric IL_5TBW_027 NA | |
| IL_6SGC_053 | 1/54/1522:1526, 1/54/1648:1655 | tHW-tHW cross-strand stack | homologous IL_5TBW_028 NA | |
| IL_6SGC_054 | 1/54/1550:1551, 1/54/1576:1578 | Single bulged G | geometric IL_4V9F_026 IL_00225.14 | |
| IL_6SGC_055 | 1/54/1551:1555, 1/54/1572:1576 | Triple sheared | homologous IL_8C3A_033 NA | |
| IL_6SGC_056 | 1/54/1586:1589, 1/54/1605:1607 | Major groove platform with extra cWW | homologous IL_8C3A_034 NA | |
| IL_6SGC_057 | 1/54/1590:1592, 1/54/1603:1604 | Single bulged U | homologous IL_8C3A_035 NA | |
| IL_6SGC_058 | 1/54/1624:1626, 1/54/1636:1640 | No text annotation | homologous IL_8C3A_036 NA | |
| IL_6SGC_059 | 1/54/1671:1673, 1/54/1682:1684 | Isolated non-canonical cWW pair | homologous IL_5TBW_034 NA | |
| IL_6SGC_060 | 1/54/1686:1688, 1/54/1848:1851 | No text annotation | ||
| IL_6SGC_061 | 1/54/1694:1721, 1/54/1841:1842 | No text annotation | ||
| IL_6SGC_062 | 1/54/1723:1725, 1/54/1838:1839 | Single bulged G | homologous IL_8C3A_040 NA | |
| IL_6SGC_063 | 1/54/1732:1737, 1/54/1792:1797 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_7A0S_027 NA | |
| IL_6SGC_064 | 1/54/1737:1738, 1/54/1790:1792 | Minor groove platform | geometric IL_5TBW_039 NA | |
| IL_6SGC_065 | 1/54/1739:1744, 1/54/1786:1789 | C-loop with bulged stacked A's | homologous IL_5TBW_040 NA | |
| IL_6SGC_066 | 1/54/1746:1749, 1/54/1781:1784 | Tandem non-canonical cWW pairs | homologous IL_5TBW_041 NA | |
| IL_6SGC_067 | 1/54/1749:1751, 1/54/1779:1781 | Isolated non-canonical cWW pair | geometric IL_5TBW_127 NA | |
| IL_6SGC_068 | 1/54/1753:1756, 1/54/1776:1777 | No text annotation | geometric IL_5TBW_501 NA | |
| IL_6SGC_069 | 1/54/1814:1816, 1/54/1823:1824 | Single bulged A | homologous IL_5TBW_045 NA | |
| IL_6SGC_070 | 1/54/1858:1860, 1/54/1874:1876 | Isolated non-canonical cWW pair | homologous IL_5TBW_046 NA | |
| IL_6SGC_072 | 1/54/1905:1909, 1/54/2067:2071 | UAA/GAN | homologous IL_5TBW_048 NA | |
| IL_6SGC_073 | 1/54/1911:1918, 1/54/2064:2065 | SSU/LSU pseudoknot | geometric IL_7RQB_037 NA | |
| IL_6SGC_074 | 1/54/1918:1920, 1/54/2063:2064 | No text annotation | ||
| IL_6SGC_075 | 1/54/1920:1922, 1/54/2062:2063 | No text annotation | ||
| IL_6SGC_076 | 1/54/1926:1933, 1/54/2053:2058 | No text annotation | homologous IL_5TBW_051 NA | |
| IL_6SGC_077 | 1/54/1933:1944, 1/54/2038:2053 | No text annotation | geometric IL_5TBW_052 NA | |
| IL_6SGC_078 | 1/54/1946:1948, 1/54/2035:2036 | Single bulged U | homologous IL_5TBW_053 NA | |
| IL_6SGC_079 | 1/54/1957:1965, 1/54/2022:2026 | Kink-turn | homologous IL_8C3A_057 NA | |
| IL_6SGC_080 | 1/54/2001:2006, 1/54/2013:2016 | No text annotation | ||
| IL_6SGC_081 | 1/54/2083:2085, 1/54/2272:2273 | Single bulged U | geometric IL_6CZR_156 NA | |
| IL_6SGC_082 | 1/54/2290:2292, 1/54/2342:2345 | Isolated cWS basepair | homologous IL_5TBW_057 NA | |
| IL_6SGC_083 | 1/54/2299:2301, 1/54/2334:2335 | Single bulged A | homologous IL_8C3A_062 NA | |
| IL_6SGC_084 | 1/54/2302:2309, 1/54/2329:2333 | Kink-turn | homologous IL_5TBW_059 NA | |
| IL_6SGC_085 | 1/54/2312:2314, 1/54/2325:2326 | Single bulged A | homologous IL_5TBW_060 NA | |
| IL_6SGC_086 | 1/54/2358:2364, 1/54/3858:3863 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_5TBW_061 NA | |
| IL_6SGC_087 | 1/54/2415:2419, 1/54/2427:2429 | C-loop | geometric IL_7A0S_047 IL_83150.2 | |
| IL_6SGC_088 | 1/54/2446:2450, 1/54/2509:2514 | UAA/GAN | homologous IL_8C3A_067 NA | |
| IL_6SGC_089 | 1/54/2477:2479, 1/54/2499:2500 | Single stack bend | geometric IL_4V83_236 IL_90729.1 | |
| IL_6SGC_090 | 1/54/2542:2547, 1/54/2772:2774 | Isolated non-canonical cWW pair | geometric IL_4WF9_041 IL_57744.1 | |
| IL_6SGC_091 | 1/54/2549:2550, 1/54/2768:2770 | Single bulged U | geometric IL_2A64_002 IL_89505.4 | |
| IL_6SGC_092 | 1/54/2589:2593, 1/54/2752:2756 | Triple sheared | homologous IL_5TBW_067 NA | |
| IL_6SGC_093 | 1/54/2613:2614, 1/54/2724:2726 | Single bulged C | homologous IL_5TBW_069 NA | |
| IL_6SGC_094 | 1/54/2614:2615, 1/54/2722:2724 | Single stack bend | geometric IL_5TBW_070 NA | |
| IL_6SGC_095 | 1/54/2646:2648, 1/54/2685:2688 | Isolated tHS basepair with bulges | geometric IL_4V9F_076 IL_85599.2 | |
| IL_6SGC_096 | 1/54/2651:2653, 1/54/2681:2682 | Single bulged G | geometric IL_3NDB_004 IL_00225.14 | |
| IL_6SGC_097 | 1/54/2656:2662, 1/54/2672:2678 | Kink-turn | homologous IL_5TBW_073 NA | |
| IL_6SGC_098 | 1/54/2704:2705, 1/54/2710:2712 | No text annotation | ||
| IL_6SGC_099 | 1/54/2832:2838, 1/54/3850:3853 | No text annotation | homologous IL_5TBW_074 NA | |
| IL_6SGC_100 | 1/54/2844:2846, 1/54/3842:3844 | No text annotation | homologous IL_8C3A_081 NA | |
| IL_6SGC_101 | 1/54/2847:2850, 1/54/3840:3841 | Major groove platform; stack outside cWW | homologous IL_5TBW_076 NA | |
| IL_6SGC_265 | 1/54/2847:2855, 1/54/3837:3841 | No text annotation | homologous IL_8C3A_484 NA | |
| IL_6SGC_102 | 1/54/2850:2855, 1/54/3837:3840 | Intercalated tWH | geometric IL_4V9F_062 IL_76758.2 | |
| IL_6SGC_103 | 1/54/2867:2872, 1/54/2877:2883 | tSH-tSH-tHH-tHS | geometric IL_4V9F_063 IL_47346.2 | |
| IL_6SGC_104 | 1/54/2889:2891, 1/54/3610:3612 | Isolated non-canonical cWW pair | homologous IL_8C3A_085 NA | |
| IL_6SGC_105 | 1/54/2896:2897, 1/54/3602:3605 | No text annotation | homologous IL_8C3A_086 NA | |
| IL_6SGC_106 | 1/54/3632:3633, 1/54/3827:3829 | Single bulged A | homologous IL_5TBW_082 NA | |
| IL_6SGC_107 | 1/54/3660:3665, 1/54/3677:3684 | Kink-turn related | homologous IL_5TBW_083 NA | |
| IL_6SGC_108 | 1/54/3700:3703, 1/54/3749:3750 | No text annotation | homologous IL_8C3A_089 NA | |
| IL_6SGC_109 | 1/54/3704:3705, 1/54/3745:3748 | Major groove intercalation | homologous IL_5TBW_085 NA | |
| IL_6SGC_110 | 1/54/3708:3710, 1/54/3741:3742 | Single stack bend | homologous IL_8C3A_091 NA | |
| IL_6SGC_111 | 1/54/3710:3714, 1/54/3739:3741 | No text annotation | homologous IL_8C3A_092 NA | |
| IL_6SGC_112 | 1/54/3715:3721, 1/54/3732:3738 | No text annotation | homologous IL_8C3A_093 NA | |
| IL_6SGC_113 | 1/54/3780:3781, 1/54/3811:3814 | Bulged stacked bases | geometric IL_5TBW_089 NA | |
| IL_6SGC_114 | 1/54/3781:3792, 1/54/3808:3811 | No text annotation | homologous IL_5TBW_090 NA | |
| IL_6SGC_115 | 1/54/3895:3898, 1/54/4563:4565 | Major groove platform with extra pair | homologous IL_5TBW_091 NA | |
| IL_6SGC_116 | 1/54/3900:3902, 1/54/4558:4561 | No text annotation | homologous IL_8C3A_097 NA | |
| IL_6SGC_117 | 1/54/3913:3915, 1/54/4388:4389 | Single bulged U | homologous IL_8C3A_098 NA | |
| IL_6SGC_118 | 1/54/3916:3917, 1/54/4384:4387 | Minor groove platform | homologous IL_5TBW_094 NA | |
| IL_6SGC_119 | 1/54/3927:3929, 1/54/4181:4184 | No text annotation | homologous IL_8C3A_100 NA | |
| IL_6SGC_120 | 1/54/3947:3952, 1/54/4060:4066 | No text annotation | ||
| IL_6SGC_278 | 1/54/3955:3969, 1/54/4052:4057 | No text annotation | ||
| IL_6SGC_122 | 1/54/3970:3974, 1/54/4037:4051 | No text annotation | ||
| IL_6SGC_123 | 1/54/4082:4088, 1/54/4161:4164 | No text annotation | homologous IL_5TBW_096 NA | |
| IL_6SGC_124 | 1/54/4191:4192, 1/54/4202:4204 | Single bulged A | homologous IL_5TBW_098 NA | |
| IL_6SGC_125 | 1/54/4243:4245, 1/54/4263:4267 | Isolated tHS basepair with bulges | geometric IL_5TBW_099 NA | |
| IL_6SGC_126 | 1/54/4291:4293, 1/54/4317:4318 | Single bulged A | geometric IL_5WWT_001 IL_31462.7 | |
| IL_6SGC_127 | 1/54/4295:4298, 1/54/4312:4315 | Tandem non-canonical cWW pairs | homologous IL_5TBW_100 NA | |
| IL_6SGC_128 | 1/54/4347:4350, 1/54/4364:4365 | Single stack bend | geometric IL_4V9F_081 IL_26793.1 | |
| IL_6SGC_129 | 1/54/4400:4401, 1/54/4442:4444 | Major groove platform | geometric IL_5TBW_102 NA | |
| IL_6SGC_268 | 1/54/4400:4403, 1/54/4440:4444 | No text annotation | homologous IL_8C3A_111 NA | |
| IL_6SGC_130 | 1/54/4401:4403, 1/54/4440:4442 | Isolated non-canonical cWW pair | homologous IL_5TBW_103 NA | |
| IL_6SGC_131 | 1/54/4403:4405, 1/54/4439:4440 | Major groove platform | geometric IL_5TBW_104 NA | |
| IL_6SGC_132 | 1/54/4405:4407, 1/54/4435:4439 | Major groove minor groove platform with extra cWW | geometric IL_5TBW_105 NA | |
| IL_6SGC_133 | 1/54/4412:4416, 1/54/4426:4430 | No text annotation | homologous IL_8C3A_114 NA | |
| IL_6SGC_134 | 1/54/4453:4454, 1/54/4526:4528 | Major groove platform | homologous IL_5TBW_107 NA | |
| IL_6SGC_135 | 1/54/4456:4458, 1/54/4520:4524 | No text annotation | homologous IL_8C3A_116 NA | |
| IL_6SGC_136 | 1/54/4458:4459, 1/54/4517:4520 | Multiple bulged bases | geometric IL_5TBW_109 NA | |
| IL_6SGC_137 | 1/54/4466:4468, 1/54/4489:4491 | Isolated non-canonical cWW pair | geometric IL_5TBW_110 NA | |
| IL_6SGC_269 | 1/54/4466:4470, 1/54/4485:4491 | No text annotation | ||
| IL_6SGC_138 | 1/54/4468:4470, 1/54/4485:4489 | No text annotation | geometric IL_3DD2_004 IL_55516.2 | |
| IL_6SGC_139 | 1/54/4495:4497, 1/54/4503:4505 | Isolated non-canonical cWW pair | homologous IL_5TBW_112 NA | |
| IL_6SGC_140 | 1/54/4537:4538, 1/54/4547:4549 | Single bulged A | geometric IL_7RQB_101 NA | |
| IL_6SGC_141 | 1/54/4580:4582, 1/54/4721:4723 | No text annotation | geometric IL_3ICQ_003 NA | |
| IL_6SGC_142 | 1/54/4582:4585, 1/54/4717:4721 | Double sheared | homologous IL_8C3A_123 NA | |
| IL_6SGC_143 | 1/54/4590:4592, 1/54/4618:4620 | Isolated non-canonical cWW pair | homologous IL_8C3A_124 NA | |
| IL_6SGC_144 | 1/54/4596:4603, 1/54/4608:4614 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_5TBW_116 NA | |
| IL_6SGC_145 | 1/54/4624:4629, 1/54/4669:4673 | No text annotation | ||
| IL_6SGC_146 | 1/54/4632:4637, 1/54/4662:4666 | UAA/GAN related | homologous IL_5TBW_118 NA | |
| IL_6SGC_147 | 1/54/4638:4640, 1/54/4659:4661 | Isolated cWH basepair | geometric IL_3R1C_018 IL_10167.6 | |
| IL_6SGC_148 | 1/54/4641:4642, 1/54/4655:4658 | Multiple bulged bases | homologous IL_5TBW_119 NA | |
| IL_6SGC_149 | 1/54/4680:4685, 1/54/4705:4710 | UAA/GAN with extra cWW | geometric IL_5J7L_350 IL_49767.8 | |
| IL_6SGC_150 | 1/54/4739:4743, 1/54/4957:4960 | No text annotation | ||
| IL_6SGC_270 | 1/54/4739:4746, 1/54/4954:4960 | No text annotation | ||
| IL_6SGC_151 | 1/54/4743:4746, 1/54/4954:4957 | Tandem non-canonical cWW pairs | geometric IL_5J7L_283 IL_85033.2 | |
| IL_6SGC_152 | 1/54/4756:4766, 1/54/4868:4877 | No text annotation | homologous IL_8P9A_352 IL_42231.1 | |
| IL_6SGC_153 | 1/54/4769:4773, 1/54/4862:4865 | Tandem non-canonical cWW pairs | geometric IL_7A0S_040 IL_77658.1 | |
| IL_6SGC_154 | 1/54/4885:4888, 1/54/4931:4934 | Tandem non-canonical cWW pairs | geometric IL_4K27_003 IL_77658.1 | |
| IL_6SGC_155 | 1/54/4890:4896, 1/54/4924:4929 | No text annotation | ||
| IL_6SGC_156 | 1/54/4898:4902, 1/54/4919:4922 | No text annotation | ||
| IL_6SGC_157 | 1/54/4972:4975, 1/54/4983:4986 | Tandem non-canonical cWW pairs | homologous IL_8C3A_135 NA | |
| IL_6SGC_158 | 1/54/4992:4994, 1/54/5057:5059 | Isolated non-canonical cWW pair | geometric IL_3D0U_006 IL_87907.2 | |
| IL_6SGC_159 | 1/54/4996:4997, 1/54/5053:5055 | Single bulged C | geometric IL_1KUQ_002 IL_61258.15 | |
| IL_6SGC_160 | 1/54/5000:5002, 1/54/5045:5050 | Isolated non-canonical cWW pair | homologous IL_5TBW_132 NA | |
| IL_6SGC_161 | 1/54/5003:5009, 1/54/5039:5044 | No text annotation | ||
| IL_6SGC_162 | 1/54/5012:5014, 1/54/5035:5036 | Single bulged C | geometric IL_6ZDP_001 IL_61258.15 | |
| IL_6SGC_163 | 1/54/5014:5017, 1/54/5032:5035 | Double sheared; A in syn | homologous IL_8C3A_141 NA | |
| IL_6SGC_164 | 1/74/15:16, 1/74/62:64 | Single bulged A | homologous IL_5TBW_372 NA | |
| IL_6SGC_165 | 1/74/21:27, 1/74/52:57 | Minor groove platform related | homologous IL_5TBW_373 NA | |
| IL_6SGC_166 | 1/74/28:29, 1/74/48:51 | Major groove minor groove platform; mini C-loop | homologous IL_7RQB_113 NA | |
| IL_6SGC_167 | 1/74/32:36, 1/74/41:45 | Symmetric double minor groove platform | homologous IL_7RQB_114 NA | |
| IL_6SGC_168 | 1/74/71:78, 1/74/98:104 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_7A0S_007 IL_04346.10 | |
| IL_6SGC_169 | 1/74/79:81, 1/74/95:97 | Isolated non-canonical cWW pair | geometric IL_5J7L_257 IL_07785.1 | |
| IL_6SGC_170 | 1/74/82:85, 1/74/92:94 | Isolated non-canonical cWW pair | homologous IL_5TBW_378 NA | |
| IL_6SGC_171 | 1/84/64:66, 1/84/92:95 | Isolated non-canonical cWW pair | geometric IL_5TBW_145 NA | |
| IL_6SGC_172 | 1/A1/23:25, 1/A1/649:651 | Isolated non-canonical cWW pair | geometric IL_3MEI_002 IL_87907.2 | |
| IL_6SGC_173 | 1/A1/34:36, 1/A1/519:521 | Isolated non-canonical cWW pair | homologous IL_4V88_385 NA | |
| IL_6SGC_174 | 1/A1/37:40, 1/A1/514:518 | Double sheared | geometric IL_4WF9_016 IL_09705.15 | |
| IL_6SGC_175 | 1/A1/41:47, 1/A1/479:481 | No text annotation | homologous IL_4V88_387 NA | |
| IL_6SGC_176 | 1/A1/49:51, 1/A1/476:477 | Minor groove platform | homologous IL_4V88_388 NA | |
| IL_6SGC_177 | 1/A1/57:62, 1/A1/86:88 | No text annotation | homologous IL_4V88_389 NA | |
| IL_6SGC_178 | 1/A1/63:68, 1/A1/81:85 | No text annotation | homologous IL_4V88_390 NA | |
| IL_6SGC_179 | 1/A1/108:110, 1/A1/351:353 | Isolated non-canonical cWW pair | geometric IL_4TS2_004 IL_28037.2 | |
| IL_6SGC_180 | 1/A1/110:112, 1/A1/349:351 | Isolated non-canonical cWW pair | geometric IL_4WF9_042 IL_87907.2 | |
| IL_6SGC_181 | 1/A1/112:115, 1/A1/348:349 | Multiple bulged bases | homologous IL_4V88_392 NA | |
| IL_6SGC_182 | 1/A1/116:121, 1/A1/343:347 | No text annotation | homologous IL_4V88_393 NA | |
| IL_6SGC_184 | 1/A1/145:151, 1/A1/167:174 | tWH-tWH-tHW-tHW | homologous IL_4V88_394 NA | |
| IL_6SGC_185 | 1/A1/152:154, 1/A1/164:166 | Isolated non-canonical cWW contact | homologous IL_4V88_395 NA | |
| IL_6SGC_186 | 1/A1/188:192, 1/A1/207:211 | Triple sheared | geometric IL_4WFL_001 IL_17948.2 | |
| IL_6SGC_187 | 1/A1/216:219, 1/A1/302:309 | No text annotation | geometric IL_1GID_008 NA | |
| IL_6SGC_189 | 1/A1/312:314, 1/A1/336:337 | Single bulged A | homologous IL_4V88_399 NA | |
| IL_6SGC_271 | 1/A1/317:319, 1/A1/332:333 | Single stack bend | geometric IL_5TBW_009 NA | |
| IL_6SGC_191 | 1/A1/359:364, 1/A1/396:403 | Kink-turn with non-sequential stacking | homologous IL_4V88_402 NA | |
| IL_6SGC_192 | 1/A1/366:371, 1/A1/393:394 | No text annotation | geometric IL_5Y58_001 IL_59877.1 | |
| IL_6SGC_193 | 1/A1/411:413, 1/A1/424:429 | No text annotation | homologous IL_4V88_404 NA | |
| IL_6SGC_194 | 1/A1/437:439, 1/A1/454:456 | Isolated cWH basepair | homologous IL_4V88_405 NA | |
| IL_6SGC_195 | 1/A1/459:461, 1/A1/468:470 | Isolated near basepair | homologous IL_4V88_406 NA | |
| IL_6SGC_196 | 1/A1/487:489, 1/A1/511:512 | Single bulged U | homologous IL_4V88_407 NA | |
| IL_6SGC_279 | 1/A1/491:495, 1/A1/508:509 | No text annotation | homologous IL_8P9A_397 IL_03109.3 | |
| IL_6SGC_280 | 1/A1/495:496, 1/A1/506:508 | Single bulged G | homologous IL_8P9A_398 IL_00225.14 | |
| IL_6SGC_198 | 1/A1/529:530, 1/A1/554:556 | Single bulged A | homologous IL_4V88_409 NA | |
| IL_6SGC_199 | 1/A1/535:537, 1/A1/546:549 | Isolated non-canonical cWW pair | geometric IL_3TD0_002 IL_57744.1 | |
| IL_6SGC_200 | 1/A1/563:565, 1/A1/585:592 | No text annotation | homologous IL_8C3A_420 NA | |
| IL_6SGC_201 | 1/A1/566:569, 1/A1/581:584 | Tandem non-canonical cWW pairs | geometric IL_6JDV_001 IL_77658.1 | |
| IL_6SGC_202 | 1/A1/599:608, 1/A1/635:637 | No text annotation | ||
| IL_6SGC_203 | 1/A1/611:617, 1/A1/624:632 | Kink-turn related | homologous IL_8C3A_425 NA | |
| IL_6SGC_204 | 1/A1/663:665, 1/A1/1162:1164 | Isolated non-canonical cWW pair | geometric IL_1Y27_001 IL_87907.2 | |
| IL_6SGC_205 | 1/A1/665:671, 1/A1/1161:1162 | No text annotation | geometric IL_4LFB_022 IL_38186.6 | |
| IL_6SGC_206 | 1/A1/673:675, 1/A1/1030:1032 | Isolated non-canonical cWW pair | homologous IL_4V88_417 NA | |
| IL_6SGC_207 | 1/A1/676:680, 1/A1/1025:1029 | tSH-tHW-tHS | homologous IL_4V88_418 NA | |
| IL_6SGC_208 | 1/A1/692:695, 1/A1/731:734 | Tandem non-canonical cWW pairs | geometric IL_1L9A_005 IL_85033.2 | |
| IL_6SGC_209 | 1/A1/802:803, 1/A1/860:863 | Major groove minor groove platform; mini C-loop | homologous IL_4V88_423 NA | |
| IL_6SGC_210 | 1/A1/805:807, 1/A1/856:858 | Isolated non-canonical cWW pair | homologous IL_4V88_424 NA | |
| IL_6SGC_211 | 1/A1/807:815, 1/A1/849:856 | No text annotation | homologous IL_4V88_425 NA | |
| IL_6SGC_212 | 1/A1/874:876, 1/A1/910:912 | Isolated non-canonical cWW pair | geometric IL_5Y85_006 IL_87907.2 | |
| IL_6SGC_213 | 1/A1/877:879, 1/A1/907:909 | Isolated cWH basepair | homologous IL_4V88_427 NA | |
| IL_6SGC_214 | 1/A1/922:923, 1/A1/1019:1022 | Major groove platform; stack outside cWW | homologous IL_4V88_428 NA | |
| IL_6SGC_273 | 1/A1/925:926, 1/A1/1015:1017 | Single bulged U | geometric IL_3NDB_005 IL_89505.4 | |
| IL_6SGC_216 | 1/A1/928:931, 1/A1/1010:1013 | Tandem non-canonical cWW pairs | geometric IL_4V88_430 NA | |
| IL_6SGC_217 | 1/A1/931:935, 1/A1/1007:1010 | Tandem non-canonical cWW pairs | homologous IL_4V88_431 NA | |
| IL_6SGC_218 | 1/A1/942:945, 1/A1/981:984 | Tandem non-canonical cWW pairs | homologous IL_4V88_432 NA | |
| IL_6SGC_219 | 1/A1/952:956, 1/A1/967:974 | Kink-turn | homologous IL_4V88_434 NA | |
| IL_6SGC_220 | 1/A1/1042:1047, 1/A1/1071:1073 | Other IL | homologous IL_4V88_435 NA | |
| IL_6SGC_221 | 1/A1/1047:1051, 1/A1/1067:1071 | tSH-tHW-tHS | geometric IL_5J7L_037 IL_17136.7 | |
| IL_6SGC_222 | 1/A1/1091:1093, 1/A1/1152:1158 | No text annotation | homologous IL_4V88_437 NA | |
| IL_6SGC_223 | 1/A1/1098:1101, 1/A1/1131:1134 | Tandem non-canonical cWW pairs | geometric IL_4V88_438 NA | |
| IL_6SGC_224 | 1/A1/1101:1103, 1/A1/1129:1131 | Isolated non-canonical cWW pair | geometric IL_4WF9_083 IL_87907.2 | |
| IL_6SGC_225 | 1/A1/1108:1110, 1/A1/1123:1124 | Minor groove platform | geometric IL_4V88_412 NA | |
| IL_6SGC_226 | 1/A1/1168:1175, 1/A1/1186:1191 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4V88_440 NA | |
| IL_6SGC_227 | 1/A1/1203:1204, 1/A1/1694:1696 | Single bulged A | homologous IL_4V88_441 NA | |
| IL_6SGC_228 | 1/A1/1206:1208, 1/A1/1691:1692 | Single bulged G | homologous IL_4V88_442 NA | |
| IL_6SGC_229 | 1/A1/1214:1217, 1/A1/1681:1685 | C-loop | homologous IL_4V88_443 NA | |
| IL_6SGC_230 | 1/A1/1230:1232, 1/A1/1526:1528 | Isolated non-canonical cWW pair | homologous IL_4V88_444 NA | |
| IL_6SGC_231 | 1/A1/1235:1236, 1/A1/1521:1523 | Minor groove platform | homologous IL_4V88_445 NA | |
| IL_6SGC_232 | 1/A1/1270:1272, 1/A1/1510:1512 | Isolated non-canonical cWW pair | geometric IL_6IA2_002 IL_87907.2 | |
| IL_6SGC_233 | 1/A1/1281:1287, 1/A1/1314:1316 | No text annotation | ||
| IL_6SGC_274 | 1/A1/1281:1290, 1/A1/1309:1316 | No text annotation | homologous IL_8P9A_470 IL_28304.1 | |
| IL_6SGC_234 | 1/A1/1287:1290, 1/A1/1309:1314 | No text annotation | ||
| IL_6SGC_235 | 1/A1/1291:1294, 1/A1/1305:1308 | Tandem non-canonical cWW pairs | geometric IL_422D_001 IL_13404.2 | |
| IL_6SGC_236 | 1/A1/1325:1327, 1/A1/1502:1503 | Single bulged U | homologous IL_4V88_449 NA | |
| IL_6SGC_237 | 1/A1/1329:1333, 1/A1/1498:1500 | Isolated cWS basepair | homologous IL_4V88_450 NA | |
| IL_6SGC_275 | 1/A1/1329:1335, 1/A1/1492:1500 | No text annotation | homologous IL_8P9A_439 IL_86012.1 | |
| IL_6SGC_238 | 1/A1/1333:1335, 1/A1/1492:1498 | Minor groove platform with extra cWW | geometric IL_4V88_451 NA | |
| IL_6SGC_239 | 1/A1/1337:1338, 1/A1/1488:1490 | Single bulged A | homologous IL_4V88_452 NA | |
| IL_6SGC_240 | 1/A1/1347:1349, 1/A1/1380:1382 | Isolated cWH basepair | homologous IL_4V88_453 NA | |
| IL_6SGC_241 | 1/A1/1363:1365, 1/A1/1374:1375 | Minor groove platform | geometric IL_5T83_003 IL_51454.3 | |
| IL_6SGC_242 | 1/A1/1395:1399, 1/A1/1447:1450 | Tandem non-canonical cWW pairs | geometric IL_5EW4_002 IL_85033.2 | |
| IL_6SGC_243 | 1/A1/1402:1405, 1/A1/1441:1444 | Minor groove platform | homologous IL_4V88_456 NA | |
| IL_6SGC_244 | 1/A1/1412:1413, 1/A1/1427:1429 | Single bulged G | geometric IL_5J7L_019 IL_00225.14 | |
| IL_6SGC_245 | 1/A1/1537:1539, 1/A1/1594:1596 | Isolated non-canonical cWW pair | geometric IL_4P3T_001 NA | |
| IL_6SGC_276 | 1/A1/1541:1550, 1/A1/1582:1592 | No text annotation | ||
| IL_6SGC_246 | 1/A1/1550:1558, 1/A1/1577:1582 | 180 degree turn | geometric IL_5J7L_055 IL_11344.2 | |
| IL_6SGC_247 | 1/A1/1560:1562, 1/A1/1573:1575 | Isolated non-canonical cWW pair | geometric IL_1YZ9_002 IL_87907.2 | |
| IL_6SGC_248 | 1/A1/1604:1610, 1/A1/1629:1635 | No text annotation | homologous IL_8C3A_469 NA | |
| IL_6SGC_249 | 1/A1/1700:1702, 1/A1/1833:1836 | No text annotation | geometric IL_4V88_463 NA | |
| IL_6SGC_250 | 1/A1/1702:1705, 1/A1/1829:1833 | No text annotation | homologous IL_4V88_464 NA | |
| IL_6SGC_251 | 1/A1/1706:1708, 1/A1/1826:1828 | Isolated non-canonical cWW pair | homologous IL_4V88_465 NA | |
| IL_6SGC_252 | 1/A1/1708:1711, 1/A1/1822:1826 | No text annotation | geometric IL_1DUQ_001 IL_25872.4 | |
| IL_6SGC_253 | 1/A1/1714:1716, 1/A1/1817:1819 | Isolated non-canonical cWW pair | homologous IL_4V88_467 NA | |
| IL_6SGC_254 | 1/A1/1717:1720, 1/A1/1813:1816 | Double sheared | geometric IL_4V88_468 NA | |
| IL_6SGC_255 | 1/A1/1720:1722, 1/A1/1812:1813 | Single bulged U | homologous IL_4V88_469 NA | |
| IL_6SGC_256 | 1/A1/1729:1731, 1/A1/1803:1805 | Isolated non-canonical cWW pair | homologous IL_4V88_470 NA | |
| IL_6SGC_257 | 1/A1/1733:1736, 1/A1/1798:1801 | Double sheared | homologous IL_4V88_471 NA | |
| IL_6SGC_258 | 1/A1/1739:1741, 1/A1/1793:1795 | Isolated non-canonical cWW pair | geometric IL_4E48_004 IL_87907.2 | |
| IL_6SGC_259 | 1/A1/1742:1746, 1/A1/1788:1792 | Triple sheared | homologous IL_4V88_474 NA | |
| IL_6SGC_260 | 1/A1/1750:1751, 1/A1/1782:1784 | No text annotation | ||
| IL_6SGC_261 | 1/A1/1751:1752, 1/A1/1780:1782 | Single stack bend | geometric IL_4C7O_002 IL_90729.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6SGC_263 | Isolated non-canonical cWW pair | ||
| IL_6SGC_044 | No text annotation | ||
| IL_6SGC_071 | No text annotation | ||
| IL_6SGC_121 | No text annotation | ||
| IL_6SGC_266 | No text annotation | ||
| IL_6SGC_267 | No text annotation | ||
| IL_6SGC_183 | No text annotation | ||
| IL_6SGC_188 | No text annotation | ||
| IL_6SGC_190 | No text annotation | ||
| IL_6SGC_197 | C-loop with extra cWW pair | ||
| IL_6SGC_272 | Tandem non-canonical cWW pairs | ||
| IL_6SGC_215 | Tandem non-canonical cWW pairs |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6SGC_001 | 1/54/112:116, 1/54/155:160, 1/54/275:278 | No text annotation | ||
| J3_6SGC_033 | 1/54/196:199, 1/54/215:228, 1/54/240:244 | No text annotation | ||
| J3_6SGC_034 | 1/54/351:367, 1/54/374:379, 1/84/21:24 | No text annotation | homologous J3_8P9A_045 J3_30040.2 | |
| J3_6SGC_002 | 1/54/380:387, 1/54/414:415, 1/84/19:20 | No text annotation | homologous J3_5TBW_002 NA | |
| J3_6SGC_035 | 1/54/380:390, 1/54/401:415, 1/84/19:20 | No text annotation | homologous J3_8C3A_049 NA | |
| J3_6SGC_036 | 1/54/451:455, 1/54/701:705, 1/54/1292:1296 | No text annotation | ||
| J3_6SGC_003 | 1/54/982:984, 1/54/1070:1074, 1/54/1236:1273 | No text annotation | ||
| J3_6SGC_004 | 1/54/1531:1537, 1/54/1622:1624, 1/54/1640:1643 | No text annotation | homologous J3_8C3A_003 NA | |
| J3_6SGC_005 | 1/54/1545:1548, 1/54/1580:1584, 1/54/1609:1614 | No text annotation | homologous J3_5TBW_005 NA | |
| J3_6SGC_006 | 1/54/1726:1727, 1/54/1802:1806, 1/54/1832:1837 | No text annotation | homologous J3_8P9A_051 J3_09667.1 | |
| J3_6SGC_007 | 1/54/1969:1972, 1/54/1994:2001, 1/54/2016:2018 | No text annotation | ||
| J3_6SGC_044 | 1/54/1969:1971, 1/54/1995:2005, 1/54/2014:2018 | No text annotation | ||
| J3_6SGC_008 | 1/54/2393:2399, 1/54/2805:2807, 1/54/2819:2822 | No text annotation | homologous J3_5TBW_008 NA | |
| J3_6SGC_009 | 1/54/2402:2405, 1/54/2785:2791, 1/54/2800:2802 | No text annotation | homologous J3_8C3A_007 NA | |
| J3_6SGC_010 | 1/54/2440:2445, 1/54/2515:2519, 1/54/2536:2537 | No text annotation | homologous J3_5TBW_010 NA | |
| J3_6SGC_038 | 1/54/2451:2456, 1/54/2465:2476, 1/54/2501:2508 | No text annotation | ||
| J3_6SGC_011 | 1/54/2551:2555, 1/54/2572:2575, 1/54/2757:2767 | No text annotation | ||
| J3_6SGC_012 | 1/54/2575:2576, 1/54/2585:2589, 1/54/2756:2757 | No text annotation | homologous J3_8C3A_054 NA | |
| J3_6SGC_039 | 1/54/2598:2602, 1/54/2737:2738, 1/54/2742:2747 | No text annotation | homologous J3_8P9A_058 J3_12393.2 | |
| J3_6SGC_013 | 1/54/3937:3939, 1/54/4074:4078, 1/54/4168:4173 | No text annotation | geometric J3_7A0S_009 J3_89368.5 | |
| J3_6SGC_014 | 1/54/4091:4094, 1/54/4114:4129, 1/54/4155:4158 | No text annotation | homologous J3_8P9A_060 J3_28639.1 | |
| J3_6SGC_040 | 1/54/4228:4230, 1/54/4331:4342, 1/54/4370:4375 | No text annotation | homologous J3_8C3A_056 NA | |
| J3_6SGC_015 | 1/54/4241:4243, 1/54/4267:4269, 1/54/4278:4283 | No text annotation | homologous J3_5TBW_013 NA | |
| J3_6SGC_016 | 1/54/4463:4466, 1/54/4491:4493, 1/54/4507:4513 | No text annotation | homologous J3_8P9A_063 J3_62630.1 | |
| J3_6SGC_041 | 1/54/4749:4754, 1/54/4879:4883, 1/54/4936:4951 | No text annotation | ||
| J3_6SGC_017 | 1/54/4970:4972, 1/54/4986:4991, 1/54/5060:5063 | No text annotation | ||
| J3_6SGC_018 | 1/74/9:14, 1/74/65:66, 1/74/109:110 | No text annotation | homologous J3_5TBW_045 NA | |
| J3_6SGC_019 | 1/84/44:45, 1/84/58:64, 1/84/95:99 | No text annotation | homologous J3_8C3A_060 NA | |
| J3_6SGC_020 | 1/A1/40:41, 1/A1/481:487, 1/A1/512:514 | No text annotation | geometric J3_4V88_078 NA | |
| J3_6SGC_042 | 1/A1/40:47, 1/A1/479:487, 1/A1/512:514 | No text annotation | homologous J3_8P9A_069 J3_46317.4 | |
| J3_6SGC_021 | 1/A1/682:685, 1/A1/917:922, 1/A1/1022:1023 | No text annotation | ||
| J3_6SGC_043 | 1/A1/682:685, 1/A1/917:923, 1/A1/1019:1023 | No text annotation | ||
| J3_6SGC_022 | 1/A1/816:819, 1/A1/829:831, 1/A1/843:848 | No text annotation | homologous J3_4V88_032 NA | |
| J3_6SGC_023 | 1/A1/938:941, 1/A1/985:993, 1/A1/1000:1004 | No text annotation | homologous J3_4V88_033 NA | |
| J3_6SGC_024 | 1/A1/1094:1096, 1/A1/1136:1140, 1/A1/1147:1151 | No text annotation | ||
| J3_6SGC_025 | 1/A1/1218:1221, 1/A1/1645:1651, 1/A1/1673:1680 | No text annotation | homologous J3_4V88_035 NA | |
| J3_6SGC_026 | 1/A1/1225:1228, 1/A1/1530:1532, 1/A1/1638:1641 | No text annotation | homologous J3_4V88_036 NA | |
| J3_6SGC_027 | 1/A1/1237:1244, 1/A1/1255:1266, 1/A1/1516:1520 | No text annotation | homologous J3_8C3A_040 NA | |
| J3_6SGC_028 | 1/A1/1272:1277, 1/A1/1320:1324, 1/A1/1504:1510 | No text annotation | homologous J3_4V88_038 NA | |
| J3_6SGC_029 | 1/A1/1340:1345, 1/A1/1384:1389, 1/A1/1481:1486 | No text annotation | homologous J3_4V88_039 NA | |
| J3_6SGC_030 | 1/A1/1350:1351, 1/A1/1360:1363, 1/A1/1375:1379 | No text annotation | homologous J3_8P9A_081 J3_76043.3 | |
| J3_6SGC_031 | 1/A1/1391:1395, 1/A1/1450:1456, 1/A1/1470:1479 | No text annotation | ||
| J3_6SGC_032 | 1/A1/1532:1536, 1/A1/1597:1604, 1/A1/1635:1638 | No text annotation | homologous J3_4V88_041 NA | |
| J4_6SGC_001 | 1/23/7:10, 1/23/25:27, 1/23/43:49, 1/23/65:66 | No text annotation | homologous J4_8VU0_001 J4_70449.29 | |
| J4_6SGC_002 | 1/33/7:10, 1/33/25:27, 1/33/43:49, 1/33/65:66 | No text annotation | homologous J4_8VU0_001 J4_70449.29 | |
| J4_6SGC_003 | 1/54/111:112, 1/54/278:283, 1/54/304:310, 1/54/327:330 | No text annotation | homologous J4_8P9A_012 J4_45801.6 | |
| J4_6SGC_004 | 1/54/196:199, 1/54/215:222, 1/54/226:228, 1/54/240:244 | No text annotation | ||
| J4_6SGC_005 | 1/54/712:713, 1/54/955:961, 1/54/971:982, 1/54/1273:1284 | No text annotation | ||
| J4_6SGC_006 | 1/54/2365:2371, 1/54/2389:2391, 1/54/2824:2829, 1/54/3856:3857 | No text annotation | ||
| J4_6SGC_007 | 1/54/2406:2410, 1/54/2434:2439, 1/54/2538:2539, 1/54/2777:2784 | No text annotation | homologous J4_8C3A_004 NA | |
| J4_6SGC_008 | 1/54/2618:2619, 1/54/2637:2642, 1/54/2692:2698, 1/54/2718:2719 | No text annotation | ||
| J4_6SGC_009 | 1/54/3634:3638, 1/54/3650:3654, 1/54/3690:3694, 1/54/3821:3826 | No text annotation | homologous J4_8P9A_017 J4_07509.2 | |
| J4_6SGC_010 | 1/54/3696:3698, 1/54/3752:3753, 1/54/3771:3780, 1/54/3814:3819 | No text annotation | homologous J4_8C3A_007 NA | |
| J4_6SGC_011 | 1/54/4231:4235, 1/54/4289:4291, 1/54/4318:4319, 1/54/4328:4330 | No text annotation | ||
| J4_6SGC_012 | 1/54/4231:4235, 1/54/4289:4293, 1/54/4317:4319, 1/54/4328:4330 | No text annotation | homologous J4_8C3A_008 NA | |
| J4_6SGC_013 | 1/54/4587:4590, 1/54/4620:4621, 1/54/4676:4678, 1/54/4712:4715 | No text annotation | ||
| J4_6SGC_014 | 1/A1/98:106, 1/A1/355:357, 1/A1/405:409, 1/A1/431:432 | No text annotation | homologous J4_8C3A_021 NA | |
| J4_6SGC_015 | 1/A1/671:673, 1/A1/1032:1037, 1/A1/1078:1089, 1/A1/1160:1161 | No text annotation | homologous J4_8P9A_022 J4_61885.6 | |
| J5_6SGC_001 | 1/54/19:21, 1/84/35:42, 1/84/101:106, 1/84/113:114, 1/84/136:138 | No text annotation | homologous J5_8P9A_010 J5_01737.2 | |
| J5_6SGC_002 | 1/54/1335:1340, 1/54/1516:1519, 1/54/1658:1661, 1/54/2288:2290, 1/54/2345:2351 | No text annotation | homologous J5_8P9A_011 J5_63811.1 | |
| J5_6SGC_003 | 1/54/2855:2863, 1/54/2887:2888, 1/54/3613:3614, 1/54/3618:3626, 1/54/3835:3837 | No text annotation | homologous J5_8C3A_004 NA | |
| J5_6SGC_004 | 1/54/3903:3910, 1/54/4392:4400, 1/54/4444:4453, 1/54/4528:4534, 1/54/4552:4557 | No text annotation | ||
| J5_6SGC_005 | 1/54/3920:3923, 1/54/4188:4191, 1/54/4204:4205, 1/54/4227:4228, 1/54/4375:4381 | No text annotation | homologous J5_8P9A_015 J5_08912.1 | |
| J5_6SGC_006 | 1/A1/30:34, 1/A1/521:527, 1/A1/558:563, 1/A1/592:595, 1/A1/641:644 | No text annotation | homologous J5_8C3A_018 NA | |
| J5_6SGC_007 | 1/A1/30:34, 1/A1/521:527, 1/A1/558:565, 1/A1/585:595, 1/A1/641:644 | No text annotation | ||
| J5_6SGC_008 | 1/A1/53:56, 1/A1/89:96, 1/A1/434:436, 1/A1/457:459, 1/A1/470:474 | No text annotation | homologous J5_8C3A_020 NA | |
| J5_6SGC_010 | 1/A1/123:129, 1/A1/183:185, 1/A1/214:215, 1/A1/310:312, 1/A1/337:341 | No text annotation | ||
| J6_6SGC_001 | 1/54/21:26, 1/54/57:67, 1/54/74:78, 1/54/105:109, 1/54/332:339, 1/84/33:35 | No text annotation | ||
| J6_6SGC_002 | 1/54/1352:1355, 1/54/1384:1388, 1/54/1395:1399, 1/54/1418:1421, 1/54/1464:1466, 1/54/1499:1504 | No text annotation | ||
| J6_6SGC_003 | 1/54/3920:3923, 1/54/4188:4191, 1/54/4204:4205, 1/54/4227:4230, 1/54/4331:4342, 1/54/4370:4381 | No text annotation | ||
| J7_6SGC_001 | 1/54/1666:1671, 1/54/1684:1685, 1/54/1852:1855, 1/54/1879:1884, 1/54/1895:1899, 1/54/2077:2078, 1/54/2278:2283 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_6SGC_037 | No text annotation | ||
| J5_6SGC_009 | No text annotation |
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