HL_6SGC_009

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGGCGAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SGC_009 not in the Motif Atlas

Homologous match to HL_8C3A_003

Geometric discrepancy: 0.0899

The information below is about HL_8C3A_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_67216.9

Basepair signature

cWW-cWW-F-tSH

Number of instances in this motif group

9

Unit IDs

6SGC|1|54|C|89
6SGC|1|54|G|90
6SGC|1|54|G|91
6SGC|1|54|C|92
6SGC|1|54|G|93
6SGC|1|54|A|94
6SGC|1|54|G|95

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain L2

eL13

Chain Q2

eL18

Chain a2

Ribosomal_L18e/L15P domain-containing protein

Chain o2

eL42