HL_6SGC_010
3D structure
- PDB id
- 6SGC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled on a poly(A) tail
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CGCGGCG
- Length
- 7 nucleotides
- Bulged bases
- 6SGC|1|54|G|134, 6SGC|1|54|G|135
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6SGC_010 not in the Motif Atlas
- Geometric match to HL_4WF9_003
- Geometric discrepancy: 0.1615
- The information below is about HL_4WF9_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75660.6
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 21
Unit IDs
6SGC|1|54|C|131
6SGC|1|54|G|132
6SGC|1|54|C|133
6SGC|1|54|G|134
6SGC|1|54|G|135
6SGC|1|54|C|136
6SGC|1|54|G|137
Current chains
- Chain 54
- 28S ribosomal RNA
Nearby chains
- Chain 84
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain N2
- Ribosomal protein L15
- Chain h2
- uL29
- Chain j2
- Ribosomal protein L37
Coloring options: