HL_6SGC_011

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UCUGAUCG

Length

8 nucleotides

Bulged bases

6SGC|1|54|C|210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SGC_011 not in the Motif Atlas

Homologous match to HL_8C3A_005

Geometric discrepancy: 0.3206

The information below is about HL_8C3A_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

6SGC|1|54|U|204
6SGC|1|54|C|205
6SGC|1|54|U|206
6SGC|1|54|G|207
6SGC|1|54|A|208
6SGC|1|54|U|209
6SGC|1|54|C|210
6SGC|1|54|G|211

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain Y2

Ribosomal protein L26

Chain e2

eL32