HL_6SGC_015
3D structure
- PDB id
- 6SGC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled on a poly(A) tail
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GGUAAACUCC
- Length
- 10 nucleotides
- Bulged bases
- 6SGC|1|54|G|315, 6SGC|1|54|U|316
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6SGC_015 not in the Motif Atlas
- Homologous match to HL_8C3A_009
- Geometric discrepancy: 0.1524
- The information below is about HL_8C3A_009
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_15076.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
6SGC|1|54|G|314
6SGC|1|54|G|315
6SGC|1|54|U|316
6SGC|1|54|A|317
6SGC|1|54|A|318
6SGC|1|54|A|319
6SGC|1|54|C|320
6SGC|1|54|U|321
6SGC|1|54|C|322
6SGC|1|54|C|323
Current chains
- Chain 54
- 28S ribosomal RNA
Nearby chains
- Chain B
- Ribosomal protein
- Chain N2
- Ribosomal protein L15
- Chain a2
- Ribosomal_L18e/L15P domain-containing protein
- Chain i2
- 60S ribosomal protein L36
- Chain o2
- eL42
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