HL_6SGC_019

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGAGACCCG

Length

9 nucleotides

Bulged bases

6SGC|1|54|C|967

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SGC_019 not in the Motif Atlas

Geometric match to HL_2Y9H_003

Geometric discrepancy: 0.0974

The information below is about HL_2Y9H_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

6SGC|1|54|C|962
6SGC|1|54|G|963
6SGC|1|54|A|964
6SGC|1|54|G|965
6SGC|1|54|A|966
6SGC|1|54|C|967
6SGC|1|54|C|968
6SGC|1|54|C|969
6SGC|1|54|G|970

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain C2

uL4

Chain E2

60S ribosomal protein L6

Chain F2

uL30